Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0013 ATGGCTGTACATACAAAATACCGTCTTATTACTTACTCAAAAGAGCTTGTGGATGGCCAGCCTATTATTGTTTCTTCAAATTCCCTTCCTATCAAGGCATTGAAATTGGAACCCGCAGGCCATGCCTACCATTCTGCTGTGCTTAAACTTCTTGGTGTTCAGGAAGATAATGGAGATGATAATAATTTGAAAAAAGTGGTTGATGAAAAGGAAAGTAGTTATCTTCCTTCATTTGATTCTTATAGCGGCAAGAGCAAGAAGAAATCTGGTTCTGGAGACAAGCAGCAAGATCACTATGCATTGTTGGGCCTTAGCCATTTAAGACATCTCGCCACGGAGGATCAAATACGTAAAAACTATCGTGAAACTGCTTTGAGGTTTCACCCTGACAAACAGGCTGCTCTTATTCTTGCCGAGGAAACTGAAGCCGCAAAGCAGGCAAAGAAGGATGAGATCGAAACTCACTTTAAGGCAATCCAGGAATCATATGAGGTATTGATTGATCCTGTGAAGAGAAGAATTTATGATTCCACAGATGAGTTTGATGATGAGATTCCCGCTGACTGTGCTCCTCAAGACTTCTTCAAGGTGTTCGGCCCTGCTTTTTTGAGGAATGGGCGGTGGTCGGTTAATCAACCAATTCCAAAACTGGGTGATGATAATACACCTTTGAAAGAAGTTGATAATTTCTACAACTTTTGGTACTCCTTTAAAAGCTGGAGGGAGTTTCCACATGCTGATGAGTTTGATCTTGAGCAAGCTGAATCTCGGGACCATAAGAGGTGGATGGAAAGGCAGAACGCAAAGCTGTCAGAGAAAGCTAGGAAGGAAGAATCTTTACGGATACGTGCTCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATACTGAGAAGAAAGGAAGAGGAAAAAGCGGATAGGCAAAGGAAAAAGCAGTCTAAGCACCTAGCAAAGAAATTACAGGAAGAAGCAGCAGCTAGAATTGCAGAAGAGGAGAGGCGACAAAAGGAGGAGGAGGATAAAAAAGCTGCCGAAGCTGCTCTGCAACAGAAGAAGGTGAAGGAGAAAGAGAAAAAGCTATTGCGGAAGGAACGTGCACATCTCCGAACTCTTTCAGTGCCTATTTTGTCACAGCATTTGCTTGATATTTCTGATGATGATGTTGAAAAGCTTTGCATGTCATTTGCTATTGACCAGCTGAGGGGTTTGTGTGAGAAAATGGAAGGTAAACTGGTCCTAGAGCAAGCACAAGTTCTAAAAGATTCACTATGTGGTGAGAAAGACGTGGTTGATAAGAAATATCAGAAACCTACCATTCAACAAAATGGTCCCGTCAAGGCTAATGGCAGTGCTTCTTTGTTGAGCAACATCGAGAAGAAGGAGAAATCTTGGAATAAAGAAGAAATTGATCTATTGCGGAAAGGAATGCTAAAATATCCCAAAGGAACTTCACGGAGGTGGGAGGTTATTTCAGAATACATTGGTACTGGAAGATCTGTGGAAGAAATTCTGAAGGCAACAAAAACAGTTCTCCTCCAAAAGCCTGATTCTGCTAAAGCTTTTGATGCCTTCCTCGAGAAAAGGAAACCTGCTACACAAATTGCATCGCCTTTGACAACCAGAGATGAACTAGAAGGGGCATCAGCGTCAGCGCCAACTGCTTCGCAGCCTGAAAGTAGCAGCGCTGCTGACACCCAACGCAACAGAAGTACAGATACTCAGAACTCTTCTGGCGATTCTATTACTGCAGATGGAGTTTCCTCTTGTTCAGAACAAGATGTGTGGTCTGCGGTACATGAAAGAGCATTGATCCAAGCTTTGAAAACCTTCCCAAAGGAAGATAGCCAAAGATGGGAGCGTGTTGCAGCAGCTGTTCCTGGTAAGACCGTGAATCAGTGCAAGAAGAAATTTGCCATGATGAAAGAGAGTTTCAGGAACAAGAAAGGTGCAGCAGTATAA 1959 0.4273 MAVHTKYRLITYSKELVDGQPIIVSSNSLPIKALKLEPAGHAYHSAVLKLLGVQEDNGDDNNLKKVVDEKESSYLPSFDSYSGKSKKKSGSGDKQQDHYALLGLSHLRHLATEDQIRKNYRETALRFHPDKQAALILAEETEAAKQAKKDEIETHFKAIQESYEVLIDPVKRRIYDSTDEFDDEIPADCAPQDFFKVFGPAFLRNGRWSVNQPIPKLGDDNTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLSEKARKEESLRIRALVDNAYKRDPRILRRKEEEKADRQRKKQSKHLAKKLQEEAAARIAEEERRQKEEEDKKAAEAALQQKKVKEKEKKLLRKERAHLRTLSVPILSQHLLDISDDDVEKLCMSFAIDQLRGLCEKMEGKLVLEQAQVLKDSLCGEKDVVDKKYQKPTIQQNGPVKANGSASLLSNIEKKEKSWNKEEIDLLRKGMLKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDSAKAFDAFLEKRKPATQIASPLTTRDELEGASASAPTASQPESSSAADTQRNRSTDTQNSSGDSITADGVSSCSEQDVWSAVHERALIQALKTFPKEDSQRWERVAAAVPGKTVNQCKKKFAMMKESFRNKKGAAV 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0013 652 Pfam DnaJ domain 97 176 IPR001623 -
Lal3g0013 652 SUPERFAMILY Chaperone J-domain 95 202 IPR036869 -
Lal3g0013 652 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 648 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Lal3g0013 652 PRINTS DnaJ domain signature 102 120 IPR001623 -
Lal3g0013 652 PRINTS DnaJ domain signature 120 135 IPR001623 -
Lal3g0013 652 PRINTS DnaJ domain signature 151 171 IPR001623 -
Lal3g0013 652 Coils Coil 319 366 - -
Lal3g0013 652 CDD DnaJ 97 168 IPR001623 -
Lal3g0013 652 SMART sant 591 643 IPR001005 -
Lal3g0013 652 SMART sant 460 513 IPR001005 -
Lal3g0013 652 MobiDBLite consensus disorder prediction 297 322 - -
Lal3g0013 652 MobiDBLite consensus disorder prediction 549 585 - -
Lal3g0013 652 Pfam Myb-like DNA-binding domain 595 639 IPR001005 -
Lal3g0013 652 Gene3D DnaJ domain 80 188 IPR036869 -
Lal3g0013 652 ProSiteProfiles SANT domain profile. 590 645 IPR017884 -
Lal3g0013 652 MobiDBLite consensus disorder prediction 532 585 - -
Lal3g0013 652 SUPERFAMILY Homeodomain-like 591 638 IPR009057 -
Lal3g0013 652 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Lal3g0013 652 CDD SANT 463 503 IPR001005 -
Lal3g0013 652 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Lal3g0013 652 ProSiteProfiles Myb-like domain profile. 595 641 IPR001005 -
Lal3g0013 652 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 648 - -
Lal3g0013 652 CDD SANT 595 641 IPR001005 -
Lal3g0013 652 SMART dnaj_3 96 171 IPR001623 -
Lal3g0013 652 Gene3D - 456 514 - -
Lal3g0013 652 Gene3D - 587 651 - -
Lal3g0013 652 SUPERFAMILY Homeodomain-like 457 504 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0013 Lal-Chr3 88250 90208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0013 98 297 C2H2 Transcription Factor Family AT1G74250 28.870 4.97e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal3g0013 DnaJ 3.2e-16 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0013 K09522 - gmx:100806665 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0013 3 88250 90208 Lal11g0021 11 157166 159142 LSH