Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0005 ATGAAGGATCGGACTAAGGTGGTGTTACGGCACTTGCCTCCTTCCCTTTCTGAATCCTCTCTCTCTCAACAAATTGATGCTCTCTTCTCCGATCATTACAACTGGTTCTCTTTCCGTCCTGCCAAATTCAGCCAGAAGCATACTTCATATTCTAGGGCCTACATTGACTTCAAGACTCCAGAGAACGTTATAGAGTTTGCTGACTTCTTTAATGGCCACGTTTTTGTAAATGAAAAAGGAACCCAATTCAAAGTCATTGTTGAATATGCTCCTTCACAACGTGTTCCAAATCACTCCTCTAAAAAGGATGCCCGTGATGGAACCATATACAAAGATTCTCAATATCTGGAATTTCTTGAACATCTCGCCAAACCTGTTGAGAATCTTCCCAGTGCTGAGATACAGTTGGAGAAGAGGGATGCAGAACGATCTGGTGCTGCAAAGGATATTCCTATTGTTACCCCACTAATGGACTTCGTGCGCCAGAAAAGAGCTGCTAAAGGACCTCGGGGATCAATTTCTAATGGAAAAATGAGTAGAAGAGCGGGCCCCTCATCAAATGGGAGTCCTAGTTCTGCTGCATCAAGACGAGGTTCTGGGAAAAAGAGAGTTCCCACTACAATGTATGTTGCAAGGAATCCGGGCAAAAGTTCTACTATAAAAGACAGATCAACTTACACTTCGGTTCCCAGGCAAGGTGATCAGCATCTTTCAAATAAAACTTCAACTGTAGCCTCTTCAGGTGGAACTCAAACAGTTGATGCAAATGGTAAGTATCTTGAATTGCTATTGTTTGCTATGCGTGGATTTCTTACCTCTTTGTCTGTCATAGCTGGAGCTTCTGGAAGTAATGATGTTGGAAAGAAGAAAATCATGCTTCTTAAAGGGAAGGAACGAGAGATAATTACTGCATCTGACTTTGACACCATGTCACAACATAACAGCATAACATCTTCAGCTAAAACTGCTCTTGATTCAACAGCTCTGAAGCGGAATCACAGGCCTGAAGGTACTGGAAGGATTATCAGAAGCATACTTTCAAACAAAGATTTGCATCATTGTCAGTCTTCCAGGCCTCACTCAGAGCAGCAAATCCAAACACCCAATCTTGAAAAAGAGAAACAACTACCTCGCTCCTTACATGTTCCGATGATTTTGAAGAGCACTAATAGGGCACCAGAGAATAGGATTGGTATGCATGATTTGCATGTTTCTAGTGAGAGGCAGGAGAGGCGTGTTAGACATAGGGATAGACCTGATCGTGGTGTATGGACAAATCGTTCCAATGGGGGTGATGATTCTTTGTCACTGTCTGCATCCTCACAAGCAGATACTTTGGAAGGAGGTCAAGCAGAGCTGAAACATGACAAGCCAAATGCAAGAAGTGGGGAGCTAAAATCTCTTGGCAGTGGCCGTGCCAGTCACTCATCAGAAAATGGTTTCAGTAAGCATTTTGGTCGCCGTGGTCCAACACATGGGGTGAAGGATGTTGATGGCCACTCACTTTCAAGTGAGGGGAAGCCTCCTAGAAGAACTGGTGGCTCTGCTTATGGTTCCCATGAGAAGGATGGTGATGATGAGAATAATAATAATAATAAATTCATGGTTGGTTCTTCTTCTTCTACTTGTACTTCCCGAGAGATGCTTGATATGAGTTTAAAGGATCATGTTGATAGCGACATCATTGTGGATGAACATGAAGATGTTACCTATATTCCACAACATGTTCTTGGAACTGGCTCTTTTGGTCTTGTTTTTCAAGCTAAATGTAGAGAATCTGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAAGACAACCGCTACAAGAATAGAGAGTTACAAATTATGCAAATGCTCCATCATCCAAATATTGTTGCCCTTACCCATTCTTTCTTTTCAACTACTCACAAACAACAACTTTACTTGAATCTTGTACTTGAATATGTTCCTCTAACTCTCAACCGTATTGCAAAGAACTATACCAGAATCAACCACCACATGCCTTTAATCTATGTCAAGCTTTATTCCTATCAGATTTGCAGGGCCCTTGCTTATATACATAATTGCGTTGGTATATGTCATCGTGACATCAAACCTCAAAACCTTCTCGTCAACCCACACACTCATCAGCTCAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGGTTAAAGGAGAACCTAATGTTTCTTACATCTGTTCAAGATACTATCGTGCTCCCGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGATGTGTAATGGCTGAATTATTTCTTGGACAGCCTTTGTTTCCTGGAGAGAGTGGAGTTGATCAACTAGTTGAAATCATCAAGGGAAAAGCATTAATGTCTCAAGTGGATCTACCTGATTTAAGTGGATCTATCTTAAATCAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTCATCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTCGATGAATTAAGGAACCCAATCACCCGCCTTCCTAATGGTCGCCCACTTCCTCCTCTGTTTAATTTTAAACCTCAGGAACTATCTGGCATTCCCCCTGATGTCATCAACCAGCTTATTCCTGAACATGCTCGTAAACAGAACTTATTTATGGCTTTGCACACTTAA 2694 0.4183 MKDRTKVVLRHLPPSLSESSLSQQIDALFSDHYNWFSFRPAKFSQKHTSYSRAYIDFKTPENVIEFADFFNGHVFVNEKGTQFKVIVEYAPSQRVPNHSSKKDARDGTIYKDSQYLEFLEHLAKPVENLPSAEIQLEKRDAERSGAAKDIPIVTPLMDFVRQKRAAKGPRGSISNGKMSRRAGPSSNGSPSSAASRRGSGKKRVPTTMYVARNPGKSSTIKDRSTYTSVPRQGDQHLSNKTSTVASSGGTQTVDANGKYLELLLFAMRGFLTSLSVIAGASGSNDVGKKKIMLLKGKEREIITASDFDTMSQHNSITSSAKTALDSTALKRNHRPEGTGRIIRSILSNKDLHHCQSSRPHSEQQIQTPNLEKEKQLPRSLHVPMILKSTNRAPENRIGMHDLHVSSERQERRVRHRDRPDRGVWTNRSNGGDDSLSLSASSQADTLEGGQAELKHDKPNARSGELKSLGSGRASHSSENGFSKHFGRRGPTHGVKDVDGHSLSSEGKPPRRTGGSAYGSHEKDGDDENNNNNKFMVGSSSSTCTSREMLDMSLKDHVDSDIIVDEHEDVTYIPQHVLGTGSFGLVFQAKCRESGEIVAIKKVLQDNRYKNRELQIMQMLHHPNIVALTHSFFSTTHKQQLYLNLVLEYVPLTLNRIAKNYTRINHHMPLIYVKLYSYQICRALAYIHNCVGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELFLGQPLFPGESGVDQLVEIIKGKALMSQVDLPDLSGSILNQVFQKRLPPEAVDLICRFFQYSPNLRCTALEACIHPFFDELRNPITRLPNGRPLPPLFNFKPQELSGIPPDVINQLIPEHARKQNLFMALHT 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0005 897 CDD RRM_like_Smg4_UPF3 6 91 - -
Lal3g0005 897 MobiDBLite consensus disorder prediction 394 423 - -
Lal3g0005 897 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 566 894 - -
Lal3g0005 897 Gene3D Phosphorylase Kinase; domain 1 558 650 - -
Lal3g0005 897 Gene3D Transferase(Phosphotransferase) domain 1 651 887 - -
Lal3g0005 897 Pfam Smg-4/UPF3 family 3 165 IPR005120 -
Lal3g0005 897 MobiDBLite consensus disorder prediction 178 196 - -
Lal3g0005 897 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 566 894 - -
Lal3g0005 897 ProSitePatterns Protein kinases ATP-binding region signature. 577 601 IPR017441 GO:0005524
Lal3g0005 897 MobiDBLite consensus disorder prediction 358 373 - -
Lal3g0005 897 Pfam Protein kinase domain 574 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0005 897 MobiDBLite consensus disorder prediction 489 505 - -
Lal3g0005 897 SUPERFAMILY Protein kinase-like (PK-like) 571 870 IPR011009 -
Lal3g0005 897 MobiDBLite consensus disorder prediction 211 249 - -
Lal3g0005 897 CDD STKc_GSK3 566 846 IPR039192 -
Lal3g0005 897 MobiDBLite consensus disorder prediction 161 249 - -
Lal3g0005 897 Gene3D - 1 94 IPR012677 -
Lal3g0005 897 ProSiteProfiles Protein kinase domain profile. 571 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0005 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672|GO:0006468
Lal3g0005 897 MobiDBLite consensus disorder prediction 427 447 - -
Lal3g0005 897 MobiDBLite consensus disorder prediction 352 541 - -
Lal3g0005 897 SMART serkin_6 571 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0005 897 SUPERFAMILY RNA-binding domain, RBD 5 94 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0005 Lal-Chr3 49943 59900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0005 577 846 Core Cell Cycle Gene Families AT1G76540 33.103 7.65e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lal3g0005 Pkinase 5.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0005 K03083 K14328 gmx:100798866 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0005 3 49943 59900 Lal3g0005 3 49943 59900 ECH
Lal5g1863 5 20227870 20235569 Lal3g0005 3 49943 59900 LSH