Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0003 ATGGGCTGTATATGCTCCAAAGCAAAATCTGCAAATCAATATGTTGCTAACAACCATGACTATGACCATGACCATGACAATGATGAGTTGCAACTTCAATTGAAGGAAGAAGCAAATAGTAATAATAATATTAATATAACATCATCATCTAAGAACAATGGCAATGATGAAGGTGAGAAGAACGGTACTGTTGTAACAGACGTGGGTATGGGAGGAGAAAAAGTACGTAGGATATCAAGATTATATAGTGTGACTAGAGGAGAAGAAGCACGTAAGATATCAAGATTATATAGTGTGACTAGAGGAGAAGAAGCACGTAGGATATCAAGATTATATAGTGTGACTAGAGGAGAAGAATCACGTAGGATATCAAGATTATATAGTGTGACTAGAGGAGAAGAATCACGTAGGATATCAAGATTATATTGTGTGACTAGAGGAGAAGAAGCGCGTAGGATATCAAGATTATATAGTGTGACTAGAGGAGAAGAAGCACAGAGGAAAGAGGAACACAGGTTCTTGCTGGTTGGCCTTCTTGGCTCACTGCTGTCGCTGCTCAAGCCATTACTGGTTGGATTCCTCGCAGACCTCACTCCTTTCAAGTTACATAAGATTGGTCAAGGAACTTACAGCACTGTTTATAAGGCTCGTGACCTTGAAACAAATCAAATTGTTGCATTGAAGAAAGTTAGATTTGGGCTTGCAGCAATACCTGCTATCAAGTTTACTGAACCACAGATCAAATGTTACATGCAACAACTGCTTCATGGTCTTGAGCATTGTCATAGCCGTGGTGTTATGCACCGTGACATAAAGGGTGCAAACCTTCTGCTTGACAATAATGGCAATTTGAAGATTGGTGACTTTGGGCTTGCAACTTTGTTTCAGCCAACTCAAGGCCAGCCTTTAACTAGTCGTGTAGTAACCTTGTGGTACCGACCACCTGAACTTTTACTTGGAGCCACAGATTATGGAACCACTGTAGACTTGTGGAGTGCTGGTTGTATACTTGCAGAATTGTTTGTCGGGAAGCCTATAATGCCTGGTCGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTTTGTGGATCACCTTCTGAAGAATACTGGAAAAAGTCAAAACTACCACATGCAACAATTTTCAAACCTCAACAGCCTTACAAACGCGTTGTTGCTCAAACATTCAGGGATATCCCTTCATCAGCAAAGAGCCTCTTGGAGGTCCTTGCTATAGAACCCAAGGACCGAGGAACTGCATCTTTAGCACTTGAGAATGTGTTCTTCAAAACAAAACCACTTTCTTGTGATCCATCAACTTTGCCAAAGTACCCACCAAGCAAGGAGTTTGATGCCAAACTTCGAGAAGGCGAAGCTAGAAGGAGAAGAGCAGCAAGTAAAGGACATGAACAGGAATCTGTTACAATGAGTTCTAAAGAGTCTAAAGCTTTGCCAGCACCTGACGCTAATGCTGAGCTGCAGGCATCAAGAGAGAGACAAGGGCAGTTTGATTCAAAATATGTTAGTGACAAGTTCAATCCTGCAGAGGATGGAGGTTCTGGCTTCCCTCTTGAACCGACAAAGTCAAGAGTTCTCAATGTTTTCTCTCATTCTGGACAGTCGATGCATCGAACTGCATATGGATCTTCTCGCAATATGAATTTGAAAGAGGAAGATTTTCTTACTGGCCCTGATCATATCTGTAGATTAAGAAAGCAAAATTCCTACTGGCACGGTAGCACTGCACAGTTATCAAGATTTTCAAATTCAGTTGCTGCTCAAGGTGATTCACGGCTTGATATGAGTGGAAACAACAGTTTGAATTCAGAGTGGCCAGAGGATCAGTTTGGTATGAGATATAACCATGAGGCTGATGGTGTGTCCAACCAATTGCTGGATGGACACAAGTCTTCCCAGAAGAAGGACTTACCTTCTGGAAATGATCATGCCTTGGTTATGCTTCCAAAAATGCCCGCTTCCACTATTCTGGACCGTTGGTGCCTCCAGGAGGAAATCTTGAGGAAATGCTTAAGGAGCATGAAAGGCAAATCCAGCAGGCTGTCCACAAAGCTAAGGACAAGCCAAAAAAAAAGCTGA 2097 0.4201 MGCICSKAKSANQYVANNHDYDHDHDNDELQLQLKEEANSNNNINITSSSKNNGNDEGEKNGTVVTDVGMGGEKVRRISRLYSVTRGEEARKISRLYSVTRGEEARRISRLYSVTRGEESRRISRLYSVTRGEESRRISRLYCVTRGEEARRISRLYSVTRGEEAQRKEEHRFLLVGLLGSLLSLLKPLLVGFLADLTPFKLHKIGQGTYSTVYKARDLETNQIVALKKVRFGLAAIPAIKFTEPQIKCYMQQLLHGLEHCHSRGVMHRDIKGANLLLDNNGNLKIGDFGLATLFQPTQGQPLTSRVVTLWYRPPELLLGATDYGTTVDLWSAGCILAELFVGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVAQTFRDIPSSAKSLLEVLAIEPKDRGTASLALENVFFKTKPLSCDPSTLPKYPPSKEFDAKLREGEARRRRAASKGHEQESVTMSSKESKALPAPDANAELQASRERQGQFDSKYVSDKFNPAEDGGSGFPLEPTKSRVLNVFSHSGQSMHRTAYGSSRNMNLKEEDFLTGPDHICRLRKQNSYWHGSTAQLSRFSNSVAAQGDSRLDMSGNNSLNSEWPEDQFGMRYNHEADGVSNQLLDGHKSSQKKDLPSGNDHALVMLPKMPASTILDRWCLQEEILRKCLRSMKGKSSRLSTKLRTSQKKS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0003 698 MobiDBLite consensus disorder prediction 38 60 - -
Lal3g0003 698 ProSitePatterns Protein kinases ATP-binding region signature. 205 228 IPR017441 GO:0005524
Lal3g0003 698 Pfam Protein kinase domain 240 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0003 698 Gene3D Phosphorylase Kinase; domain 1 194 238 - -
Lal3g0003 698 SMART serkin_6 199 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0003 698 MobiDBLite consensus disorder prediction 439 526 - -
Lal3g0003 698 PANTHER CELL DIVISION PROTEIN KINASE 201 232 - -
Lal3g0003 698 PANTHER CELL DIVISION PROTEIN KINASE 233 614 - -
Lal3g0003 698 SUPERFAMILY Protein kinase-like (PK-like) 202 434 IPR011009 -
Lal3g0003 698 PANTHER KINASE CDK9, PUTATIVE-RELATED 201 232 - -
Lal3g0003 698 PANTHER KINASE CDK9, PUTATIVE-RELATED 233 614 - -
Lal3g0003 698 ProSiteProfiles Protein kinase domain profile. 62 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0003 698 MobiDBLite consensus disorder prediction 448 476 - -
Lal3g0003 698 MobiDBLite consensus disorder prediction 38 67 - -
Lal3g0003 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Lal3g0003 698 Gene3D Transferase(Phosphotransferase) domain 1 239 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0003 Lal-Chr3 41060 44392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0003 233 467 Core Cell Cycle Gene Families AT5G10270 54.008 2.00e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal3g0003 Pkinase 5.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0003 - - gmx:100805055 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0003 3 41060 44392 Lal11g0005 11 61435 65516 LSH