Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0002 ATGTCTGAAGAGGCTGGATCCATGTTGGTAGTTTATGATGATACAAGCAGTACAGAGGAATCTCCTCATCAAACTAGCCTCTCCTTGGAAACAACTAATGATTCTATTCCTTACATTGGTCAAAGGTTTCCCACTCATGATGCTGCTTATGAATTCTATACTGAGTTTGCCAAGAGTTGTGGCTTCTCAATTCGACGTCACCGCACAGAGGGAAAAGATGGTGTTGGTAAAGGACTTACTAGACGCTACTTTGTTTGTCATCGTGCTGGAAATACTCCTGTCAAAACTTCAGCCGAAAGTAAACCCCAAAGGAATAGAAAATCTTCTCGATGCGGATGCCAGGCTTATATGCGGATAAGCAAGACAACAGAATCTGGAACTCCAGAATGGCGTGTGACTGGTTTTGCAAACCACCATAATCATGAACTTCTAGAACCAAACCAAGTTCGATTTCTTCCTGCATATAGAACTATTTCTGATGTTGACAAAAACCGAATCCTTATATTTGCCAAAACAGGGATCTCTGTTCATCAAATGATAAGGCTCTTGGAGCTTGAGAAGCGTGTGGAACCTGGATATTTGCCCTTTACTGAAAAGGATGTAAGGAATTTACTACAGTCATTTAGGAAATTAGATCCAGAAGAAGAAGGCTTAGATTTATTGAGAATGTGCAGAAACATTAAGGACAAAGATCCTAATTTTAAGTTTGAGTATACGCTTGATATAAACAACCGTTTGGAGAACATTGCCTGGTCATATGCCTCGTCAATCCAGTTGTATGATATCTTTGGTGATGCAGTGGTGTTTGATACAACACACCGCCTGACTGCATTTGACATGCCACTTGGGATATGGGTTGGAATGAATAATTATGGAATGCCTTGCTTTTTTGGCTGTGTGCTTCTGCGAGACGAAACCATGAGGTCATTCTCCTGGGCACTGAAGGTTTTCTTAGGTTTTATGAATGGGAAAGCTCCACAGACTATATTAACTGACCAAAGCATATGTCTCAAAGAGGCACTATCCATGGAAATGCCAACAACAAAACATGCTTTCTGCATATGGATGATAGTTGCAAAATTTCCATCTTGGTTTAATGCTGTTCTAGGAGAGCGTTACAATGAGTGGAAGGCTGAATTTTATAGGATCTATAATCTGGAGTCAGTTGAGGATTTTGAAGTAGGCTGGCGAGAAATGGTTTGTTCTTTTGGGCTGCATTCCAACCGGCACATGGTTACTTTATATAGCTCACGCTCATTTTGGGCGTTGCCATTTTTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAATGCTTTCATTCAACGGTTTTTAAGTGCACAGACTCGACTTGCACATTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACGGGAGCCCCCATGGAATCACACGCTGCCACAATTCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCTTCTTTTCCAATTGAAGATGGTTTTCTTGTTAGGCACCACACAAAGGCTGAGGGGGGAAAGAAAGTTTATTGGGCCCCTCATGAAGGAATTATTAGTTGCAGCTGCCACCAGTTTGACTTCTCTGGAATTCTATGTAGGCATTCTCTAAGAGTTCTTTCCACGGGAAATTGTTTTCAGATCCCAGATAGGTATCTTCCAATTCGTTGGCGTCGTATCAGTATGCCTTCTTCTAAGCTTCTTCAGAGTGCACCTAATGATCATGCTGAAAGAGTTCAATTATTGCAAAATATGGTTTCATCTCTGATAACAGAATCTGCGAAGTCTAAGGAACGATTAGATATTGCAACAGAACAAGTTTCCAATCTTTTGTCTCGCATTAGAGAGCAGCCAATTTCATTACAAGGTGTCAAAGATGTTTCTTCCATCAATAGGAATGTGTGA 2007 0.4081 MSEEAGSMLVVYDDTSSTEESPHQTSLSLETTNDSIPYIGQRFPTHDAAYEFYTEFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSAESKPQRNRKSSRCGCQAYMRISKTTESGTPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDVDKNRILIFAKTGISVHQMIRLLELEKRVEPGYLPFTEKDVRNLLQSFRKLDPEEEGLDLLRMCRNIKDKDPNFKFEYTLDINNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGMNNYGMPCFFGCVLLRDETMRSFSWALKVFLGFMNGKAPQTILTDQSICLKEALSMEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRIYNLESVEDFEVGWREMVCSFGLHSNRHMVTLYSSRSFWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATILTPFAFSKLQEQLVLAAHYASFPIEDGFLVRHHTKAEGGKKVYWAPHEGIISCSCHQFDFSGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISMPSSKLLQSAPNDHAERVQLLQNMVSSLITESAKSKERLDIATEQVSNLLSRIREQPISLQGVKDVSSINRNV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0002 668 MobiDBLite consensus disorder prediction 11 29 - -
Lal3g0002 668 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 10 662 - -
Lal3g0002 668 SMART 26again6 553 580 IPR006564 GO:0008270
Lal3g0002 668 Pfam MULE transposase domain 267 359 IPR018289 -
Lal3g0002 668 Pfam SWIM zinc finger 550 576 IPR007527 GO:0008270
Lal3g0002 668 ProSiteProfiles Zinc finger SWIM-type profile. 542 578 IPR007527 GO:0008270
Lal3g0002 668 Pfam FAR1 DNA-binding domain 51 144 IPR004330 -
Lal3g0002 668 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 10 662 IPR031052 GO:0006355
Lal3g0002 668 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0002 Lal-Chr3 35628 39125 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal3g0002 MULE 1.3e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0002 - - gmx:100810717 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0002 3 35628 39125 Lal3g0002 3 35628 39125 ECH