Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1976 ATGTGGACATCTGCTAATTCAGATAATACCTCGCTTTCAATGTCTGGGTCTACTTCACGGCTTCATGCAGATACTAGTTCTGTCCACATTCCTTTGTGTTCTCTTTGCCAAAAGGCTTTATCACCTGATAATGAGATAATTGGTGATCTTCCAACCAATGGTGTATGTAGTGATTGTAAGTTTTTATTACTTGAAGACTTTGGGAATCCTCAAAGAAGGCATAGAGGAAGATTCAGGCACCACAGTTCTGAATCAGTTGAGAATATTCTGTCACAGCAGCTATCATATACGGTGAGGCAAAACCAATCCACTTCATCTGTGGAGGATAATCAAGTTGTGGATGGCGATGCCCCCGCTTGGTCTTTGCATTATGGGAGTACACATACTACCCCTAGTGGGTCTAGAAGCTGGAGACGGGTTCTATCAGATACTGACAGTGATGGTTTTGATAATTGGGGCTCTCTTTATGACGAAAGTGAATCAAATGCAAGTTTTAGACGGTATAGGATTCCTCTTGCTGAGACTGATTCTTTCTCTTTCAGTGCTTATGGAGGTGACTCTGATATCTCAATGGATAGATATAGTTTTGTAGGTACAGATATGTTTAATTTACGAGATGAGGCAGATGAGTTGGATAGTGACACTGATATAGATCCAATGCATGCTGGCCTCGGCCAATGGAACATAGAAGACGATGACGAAGAGGATGAGGAGGATGATGAAGAAGAGGAAAGGGAATGGGAACGAGCTGAGGAAGAGGAAGCTGAGGCCACAACTCACCTTCAAAACTTTTTCACCTCGAGTCCAAGTGAGAGCAGGGGCGGCATTAATTGGGAACAAAGATTTAATTCTACTGTTGAAGGAATGGTTAACCAGAGAATCAGGGATAGCTGGCGAGTAACGTACAACAATGATCACAACAGCTTCACTAACTTGGATGACACTGATTTACTACCTACTTATGAAAGGGCAAACTTTGGGGATTATCTTGATGCTAGAAACTTCGAGGAATTGCTAGAGCATCTTGCTGAGAATGACAACACAAGAAGAGGAGCACCTCCTGCTGCTTTGTCATTCGTGAGTAATCTGCCTCTCGTAGTCATCGGCAATGAGGAACTTGAGAAGCATGGCGAAGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGACCCCTGGCACCAAAGTAAACCAGCTTCCATGTTCTCATCTTTATCACACCTGCTGCATTTTGCCGTGGTTGAGTGCACGAAATTCATGCCCTCTCTGTCGTTATGAGCTACCAACGGACGATAAGGATTACGAAGAGGGAAAGCAGAATAGCATTAATAGTAGAAACGTGATCCATGATGTGATGGAGGATGATAGTTCCCCTGATGTTTCTGATGAAGCTGATATGAATGAAGAGGATGGTGGGATACAGCCGCGAGAACCTGTGAGCTCAGGTTCTAGCGTGAATTCTTCTGCAACAAGAGGTGATGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGCCTTGTCGGCATTGTTCTTGTCTTTTGGTTAGGTAATAATCCTCAGAATCAGATTGAAGGGTGTAGAAATCTTGATGGTCACAGCTTATCTGGGCAAAATCACCATGAGCTTCGTGTTTATGCCTCGGCCGACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTTTCCATTCTAA 1689 0.4358 MWTSANSDNTSLSMSGSTSRLHADTSSVHIPLCSLCQKALSPDNEIIGDLPTNGVCSDCKFLLLEDFGNPQRRHRGRFRHHSSESVENILSQQLSYTVRQNQSTSSVEDNQVVDGDAPAWSLHYGSTHTTPSGSRSWRRVLSDTDSDGFDNWGSLYDESESNASFRRYRIPLAETDSFSFSAYGGDSDISMDRYSFVGTDMFNLRDEADELDSDTDIDPMHAGLGQWNIEDDDEEDEEDDEEEEREWERAEEEEAEATTHLQNFFTSSPSESRGGINWEQRFNSTVEGMVNQRIRDSWRVTYNNDHNSFTNLDDTDLLPTYERANFGDYLDARNFEELLEHLAENDNTRRGAPPAALSFVSNLPLVVIGNEELEKHGEELVCAICKDVLTPGTKVNQLPCSHLYHTCCILPWLSARNSCPLCRYELPTDDKDYEEGKQNSINSRNVIHDVMEDDSSPDVSDEADMNEEDGGIQPREPVSSGSSVNSSATRGDGRWFFLAAAPIVSLVGIVLVFWLGNNPQNQIEGCRNLDGHSLSGQNHHELRVYASADQRESRSRRWWFPF 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1976 562 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 312 485 - -
Lal2g1976 562 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 312 485 - -
Lal2g1976 562 SMART ring_2 382 422 IPR001841 -
Lal2g1976 562 MobiDBLite consensus disorder prediction 259 276 - -
Lal2g1976 562 SUPERFAMILY RING/U-box 375 429 - -
Lal2g1976 562 Pfam Ring finger domain 382 423 IPR001841 -
Lal2g1976 562 MobiDBLite consensus disorder prediction 229 251 - -
Lal2g1976 562 MobiDBLite consensus disorder prediction 432 486 - -
Lal2g1976 562 MobiDBLite consensus disorder prediction 211 276 - -
Lal2g1976 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 429 IPR013083 -
Lal2g1976 562 ProSiteProfiles Zinc finger RING-type profile. 382 423 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1976 Lal-Chr2 21935878 21938895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1976 24 562 C3H Transcription Factor Family AT5G01980 43.649 6.81e-117 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1976 - - pvu:PHAVU_008G078700g 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1976 2 21935878 21938895 Lal9g1735 9 19550128 19553984 LSH
Lal2g1976 2 21935878 21938895 Lal1g2338 1 25218242 25223340 LSH