Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1964 ATGGTGCGTTCTAACCTGCGAACTGCAGTAATCGATTACAACAAATTTTTCCCCAAACCGACTTCTCATAGGAAGTCGGTTTTCCCCAAACCGACTTCTGTACAGAAGTTTTCCCCCACCAAACTGACTTCTGAAAGGTCACTGCAAGGTAACAGGTTCCTATTTCAATTTCTGTTTTTCAAAACCCTAACCCCTCTTCTTCTTATGGCTGGTTTTCACACCAATAAAGATGATGCTCCTACTGCTACTGATGGTGGAAATGATGTTGTGAAATTGAGTTCTAGGGATCAAAGATTGGCTTTTCCAGGTGAGCCCAAATGTATTATATGTGGACGATATGGTGAGTATATTTGTGATGAAACCGATGATGATGTTTGCAGTTTGGATTGTAAACAATCACTACTTCGTACAATTGCCACATCTCCACCTAAAATGCTACCTGCATCTGATGAATGCTTTTATGTTAGACCTAATAATAATGATCATTATGAATTACGAACTCGATCTTTAGTTAAGGATCAAGCTGATTTGCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGGTGATGATGATATGCCTGCACCAATTTTGTCATTCACTTCTTGTCACATCCATGACACACTCCTTCACAATATACAAGAGGCAGGATATGATATGCCTACACCTATCCAGATGCAAGCTATTCCTGCTGCTTTGACACCCAAAAACAACTTGCTTGTATTGGCTGATACGGGATCTGGAAAGTCTGCTTCTTTTCTTATTCCCATAGTTTCCCGTTGTGTAACTCGTCGTCTTGCATTTGCTTCAGATGATAAGAAGAAGCCTTTAGCTCTGGTGTTAACACCTACCAGGGAACTTTGTATACAGGTTGAAGAGCATGCTAAATTGCTCGGAAAGGGGTTGCCTTTTAAAACTGCACTTGTGGTTGGTGGTTACGCCATGGCTGGACAACTCTACCGCATTCAGCAAGGAGTGGAGTTGATCGTGGGTACCCCGGGAAGGCTTATTGATCTTTTAATGAAGCATGAGATCGAATTAGATGATGTCATGACTTTTGTAGTGGATGAGGTGGACTGCATGCTGCAAAGGGGTTTCCGAGATCAGGTCATGCAGATATATACGTCTCTGTCACAACCACAGGTCTTGATGTATTCTGCTACAATGTCTAATGATATAGAGAAGATGACTAACTCTCTTGCAAAAGGTACAGTTGTTATCTCTGTTGGGGAACCAAACAGGCCAAATAAGGCAGTGAAACAAATAGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGATATTTTGGCTAGCAAGCAACATTTTAAGCCACCTGTCGTGGTATATGTCAGCTCCAGACTCGGGGCTGATCTCCTGGCAAATGCGATTACCGTTGCAACTGGAATTAAGGCGAGTTCTATTCATGGGGAGAAGTCTATGACGGAAAGGAGAGAAACAATGCAGTCCTTTTTAGTGGGTGATATCCCTGTGGTAGTGGCCACTGGAGTTTTGAGTAGGGGGGTTGATCTGTTGGGTGTTCGGCAGGTAATTGTATTTGACATGCCTAATTCCATTAAGGAGTATGTACACCAGATTGGCAGGGCTTCTAGAATGGGAGATGAAGGTCAATCCATAGTTTTTGTAAATGGGGAGAATAAGAATGTCTTAGCAGAGTTAGTTGATGTTTTAAAATCTGGTGGAGCAGCTATACCTCGGGAAATTGCCAATTCACGGTATATTGCAGGATTTTTCTCTAGTGGCAAGGGTTCAAAGAAGAGAAAGCAAAGATAG 1800 0.42 MVRSNLRTAVIDYNKFFPKPTSHRKSVFPKPTSVQKFSPTKLTSERSLQGNRFLFQFLFFKTLTPLLLMAGFHTNKDDAPTATDGGNDVVKLSSRDQRLAFPGEPKCIICGRYGEYICDETDDDVCSLDCKQSLLRTIATSPPKMLPASDECFYVRPNNNDHYELRTRSLVKDQADLLRKKLDIHVKGGDDDMPAPILSFTSCHIHDTLLHNIQEAGYDMPTPIQMQAIPAALTPKNNLLVLADTGSGKSASFLIPIVSRCVTRRLAFASDDKKKPLALVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGYAMAGQLYRIQQGVELIVGTPGRLIDLLMKHEIELDDVMTFVVDEVDCMLQRGFRDQVMQIYTSLSQPQVLMYSATMSNDIEKMTNSLAKGTVVISVGEPNRPNKAVKQIAIWVESKQKKQKLFDILASKQHFKPPVVVYVSSRLGADLLANAITVATGIKASSIHGEKSMTERRETMQSFLVGDIPVVVATGVLSRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGDEGQSIVFVNGENKNVLAELVDVLKSGGAAIPREIANSRYIAGFFSSGKGSKKRKQR 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1964 599 Gene3D - 410 582 IPR027417 -
Lal2g1964 599 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 198 226 IPR014014 GO:0003724
Lal2g1964 599 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 230 407 IPR014001 -
Lal2g1964 599 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 418 581 IPR001650 -
Lal2g1964 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 555 IPR027417 -
Lal2g1964 599 SMART ultradead3 217 422 IPR014001 -
Lal2g1964 599 Gene3D - 159 409 IPR027417 -
Lal2g1964 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 409 IPR027417 -
Lal2g1964 599 Gene3D - 86 143 - -
Lal2g1964 599 SMART helicmild6 460 542 IPR001650 -
Lal2g1964 599 Pfam Helicase conserved C-terminal domain 432 542 IPR001650 -
Lal2g1964 599 Pfam DEAD/DEAH box helicase 222 395 IPR011545 GO:0003676|GO:0005524
Lal2g1964 599 Pfam HIT zinc finger 105 131 IPR007529 -
Lal2g1964 599 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 87 583 - -
Lal2g1964 599 CDD SF2_C_DEAD 419 551 - -
Lal2g1964 599 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 87 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1964 Lal-Chr2 21869759 21873095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1964 196 579 Eukaryotic Initiation Factors Gene Family AT3G19760 28.278 5.91e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1964 K19466 - gmx:100784491 782.326