Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1960 ATGCGTTTCAGAGACAGGAACATAGGAGAAGGGATGGAATGTGATGAATCAAAATCAGTGAGTCAAAATGGATCAATGACAACAACTCAGCTAACAATTGATGAGAGTCTTCTGGTTGATCCTAAGTTACTGTTTATTGGCCATAAGATTGGTGAAGGAGCTCATGGAAAAGTTTATGAAGGACGGTATCGAGATCAAATTGTTGCAATTAAAGTTCTGCATTGTGGGAGCACTTCGGAAGAAAGTGCTGCACTAGAAAATCGTTTTGCTCGGGAAGTTATCATGATGTCCCGTGTCCATCATGATAATCTTGTTAAGTTCATTGGAGCTTGCAATAATCCGCTTATGGTGATAGTTACTGAGCTATTACCGGGGATGTCACTGCGCAAATATTTAATGAGTATCCGTCCTAAACTATTAGAAGTTCATGTGGCTATAAACTTTGCCCTCAATATTGCTCGAGCAATGGATTGGCTACACGTCAATGGAATCATACATAGAGATCTAAAACCCGACAATCTCTTGCTTACGGCAAATCAGATGTCTGTAAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCTGTAACTGAGATGATGACTGCAGAAACTGGAACTTACCGTTGGATGGCACCGGAGTTGTACAGCACAGTGACGTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTGTATAGTTTTGGAGTTGTTTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGGATGTCTAATTTACAGGCTGCATATGCTGCTGCATTTAAGCAAGCGAGGCCTAGCATTCCTGATGATATATCTCCTGATCTCGCGTTCATCATACAATCATGCTGGGTCGAAGAACCTAACATGAGACCAAGTTTTAGTCAGATCATCCGCATGCTCAACACATTTCTCTTCACACTCTCACCCCCTTCTCCTTTTCCAGTAGTAGAACCTGACAATCATGAACCTGATGCATCAGCAACAACCGAGTTTTCTGCCCGTAACAAAGGAAAGTTTGCTTTTCTTCGCCATTTGTTTTCTTCAAGGAGGACCAGAAACTAA 1077 0.4188 MRFRDRNIGEGMECDESKSVSQNGSMTTTQLTIDESLLVDPKLLFIGHKIGEGAHGKVYEGRYRDQIVAIKVLHCGSTSEESAALENRFAREVIMMSRVHHDNLVKFIGACNNPLMVIVTELLPGMSLRKYLMSIRPKLLEVHVAINFALNIARAMDWLHVNGIIHRDLKPDNLLLTANQMSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGVVLWELLTNRMPFEGMSNLQAAYAAAFKQARPSIPDDISPDLAFIIQSCWVEEPNMRPSFSQIIRMLNTFLFTLSPPSPFPVVEPDNHEPDASATTEFSARNKGKFAFLRHLFSSRRTRN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1960 358 Gene3D Phosphorylase Kinase; domain 1 32 123 - -
Lal2g1960 358 SUPERFAMILY Protein kinase-like (PK-like) 25 336 IPR011009 -
Lal2g1960 358 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 5 335 - -
Lal2g1960 358 ProSitePatterns Protein kinases ATP-binding region signature. 50 71 IPR017441 GO:0005524
Lal2g1960 358 Gene3D Transferase(Phosphotransferase) domain 1 127 317 - -
Lal2g1960 358 CDD STKc_MAP3K-like 50 305 - -
Lal2g1960 358 ProSiteProfiles Protein kinase domain profile. 44 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal2g1960 358 PRINTS Tyrosine kinase catalytic domain signature 120 133 IPR001245 GO:0004672|GO:0006468
Lal2g1960 358 PRINTS Tyrosine kinase catalytic domain signature 158 176 IPR001245 GO:0004672|GO:0006468
Lal2g1960 358 PRINTS Tyrosine kinase catalytic domain signature 232 254 IPR001245 GO:0004672|GO:0006468
Lal2g1960 358 PRINTS Tyrosine kinase catalytic domain signature 276 298 IPR001245 GO:0004672|GO:0006468
Lal2g1960 358 SMART serkin_6 44 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal2g1960 358 PANTHER SERINE-THREONINE PROTEIN KINASE 5 335 - -
Lal2g1960 358 MobiDBLite consensus disorder prediction 1 26 - -
Lal2g1960 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Lal2g1960 358 Pfam Protein tyrosine and serine/threonine kinase 46 305 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1960 Lal-Chr2 21854625 21861762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1960 32 358 MAP Kinase Kinase Kinase AT5G01850 72.080 2.23e-177 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal2g1960 PK_Tyr_Ser-Thr 4.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1960 - - gmx:100816708 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1960 2 21854625 21861762 Lal2g1960 2 21854625 21861762 ECH
Lal2g1960 2 21854625 21861762 Lal1g2304 1 24967956 24972592 LSH