Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1956 ATGGCAGATCCTGCTAGTTATGGCAATCTTGAACAAGTTAGATTTAATGGCTGCTTCAAACACTTTTTGAAGGCACTCATTGCATTAAAGAAAGGTGCTCAGTTAATAAAGTATAGTCGAAAAGCGAAGCCAAAAGTTTGCCCCTTCAGACTTTCCCCGGATGAAACAACACTGATTTGGCTTTCTAAAAAAAAGGAAAGGAACCTGAAATTATCTTCAGTTTCGCGTATTATCCCGGGACAAAGAACTGCTGTGTTTAGAAGATATTTGCAACCAGAAAAGGATTATCTTTCATTTTCACTTCTTTATAACAATGGGGAAAGGACACTTGATCTGATATGCAAGGACAAAGAAGAGTCAGAGCTATGGTTTGAAGGCCTTAAGACATTAATTTCAACTGGAAAGTTCAATTGGCGTACTACAAGTAATTTATCCTATTTTCAGGATGGTGATGATTTAATTGCGAATGGTCGTTCTTTTGGTGCAGCACTAGAGATTGCATCAAGCATTGTTGGTGGCAGAGTCTCTATTAGTTCATTTTCTCGTCAACCTTCATCGCGTTCGATACGCTCAGATGCGAAGTTAGAACGCACAATTATGCAACCAAGGACGAGCATTGGAGATGGTTTTCGTGTTAGTGTGTCAAGTACACCTAGCACTTCAAGTGGAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATATATGGGGAGAGGTTTGGTCAGATGGTGTTGCGCCTGAAGGGTATGGGACTCAAGTCCCTTCAACAACTGATGTGCTTATTCCTAAGCCCTTAGAATCAATTGTTGTTCTTGATGTTCAACAGATTGCATCAGGCGTGTGCCACATTGCTTTAGTCACAAGGCAAGGGGAAGTTTTCACTTGGGGGAAGGAATCTGGTGGTAGACTAGGACATGGGAGCGATAAAGATTTCGGTCACCCTCATCTTGTTGAATTCCTGGCAGTTACTAATGTGGATTTTGTTTCATGTGGAGAGAATCATACATGTGCTGTATCTACATCAGACGATGTTTTCTCTTGGGGCGACGGTACATATAATGTTGGACTTTTAGGCCATGGCACTGAGGTTAGCCACTGGATACCAAAGAGGGTATGTGGCCCTTTGGAAGGACTTCAAGTTATATCAATTGCATGTGGGACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTCACCTTTGGTGATGGAACATTTGGTGTGTTGGGTCATGGAGATAGACAGAGTGTGTCATATCCAAAAGAGGTACAATTACTAAGTGGATTGAAGACTATTAAGGTTGCTTGTGGAGTATGGCATACTGCAGCTATAGTAGAGGTTATGTTTCAATCTGGTTCTAATGTTTCATCCAGGAAACTTTTCACTTGGGGTGATGGTGACAAATATCGATTAGGACATGGAAACAAGGAAACATATCTTCAACCGACATGTGTCTCGGCGCTTATTGAATATAACTTCCACCAGATAGCATGTGGACACACTATGACTGTTGCATTAACTACATCTGGCCATTTATTTACCATGGGAGGCGCCGAAAATGGTCAACTAGGAAATCCTTTGTCCGACGGAAAAATACCTATCTTAGTACAAGATAAGTTAGTAGGTGAGTTTGTTGAAGAGATATCATGTGGTGCACACCATGTTGCAGTTTTGACATCAAGAAGTGAACTATACACTTGGGGGAAAGGTGCTAATGGAAGATTAGGACATGGCGACATAGAGGACAGAAAAACGCCAACTTTGGTGGAAGCCTTGAGAGAAAGGCATGTGAAAAATATCTCATGTGGATCAAACTTCACATCTTGTATATGCATACATAAATGGGTCTCTGGAGTGGACCAGTCGGTTTGCTCAGGTTGTAGACAACCATTCGGTTTTACTCGAAAAAGGCACAATTGTTATAACTGTGGATTGGTGCATTGCCATGCTTGTAGCTCAAGAAAGGCAATGAAAGCAGCATTGGCTCCAACGCCAGGAAAACCTCATCGCGTGTGCGACCCATGTTATTCTAAGCTTAAAGCCGTTGAGGCTGGTATTGCAGCTGGTGTTAATAAAAGAGTTGCTACTACGCAGCAACAATCGATGGATGGAAGGGAAAGATTAGGCTATGGAGAAGTAAGGTCTTCAAGACTCTTATCTCCTATGATGATAGAACCAATGAAATTCCTTGATACAAGGACTAATAAGCTTGGAAACAGATATGATTATTCTTCTTCCATGTCACGAGCTTCTCAAGTTCCTTCAAATTTGCAATTGAAAGATGTTGCATTTCCAAATTCATTGGGTTCCATCCAAAATGTTTTGAGGCCAACTATAGCTCAAAGCCTACAACAAACTGCACCCCAAATTTCAAGACAAGCATCACCATATGCAAAGAGGCCAAGCCCGCCACGTTCTGGAAATCCTGGATTTTCTAGAAGTGTCATTGATAGTTTAAGGAAGACAAATGAGCTTTTGAACCAGGAAACCTCAAAATTGCAGAACCAAATTCGAAGTTTGAAGCAGAAAAGTGATATGAAAGATGTAGACATCCAGAAGCTTCAGAAAAATGTTAAGGAAGTTGCATTGTTGGCTGCAGAGCATTCTTCTAAGAATAAAACAGTGAAAGATTATTTTGAGTCCATGATAGAACAGTTGAAGGAAATAAGTGAGAAGTTAGCACCAGAGAATTCAGACAGTGAAAATATGAGAAGCATGCTTACTAAAGCAGAAGAATTTCTGAAAGAAAATGAAACAAACACAAGTATCTCAAGTAGTGACTCTCCTAAAGTTGAAGAACAAAATGAAAGAAATACAAGTATCTCAAGTAGTGACTCTCCTAAAGTTGAAGAACAAAATGAAAGAAATACAAGTATCTCAAGTAGTAACTCTCCTAAAGTTGAAGAAGAAAGAATAGAAGAAAAGAATAAAGTAGTTGATGAAGAAAATGCCCTTAAAGAAAGCAATAATAGATTATCTGATGCTAAAGAATCTTCAGAAAGCACTTCAAATGATTCAAAGTCAATGGAAGAAGTACAAGTGATTGAACAATTTGAACCAGGTGTTTATGTAACACTTATAGTAAAAGCTGGTGGTATCAAAGTTTTCAAAAGAGTTAGATTCAGTAAGAGAAGGTTCCGTGAGCATCAAGCAGAAGAATGGTGGACAAAAAACAAAGACAAGGTGCTTAGGAAGTATAGTAGTAATTCACAACCTACAAATCATGTACCTAGTACCACTCCGCCACCGCCGCCACCTCCTCCGGCTGAAGAAAATATTGAGGCAGACGCTTCATCTTAG 3312 0.3995 MADPASYGNLEQVRFNGCFKHFLKALIALKKGAQLIKYSRKAKPKVCPFRLSPDETTLIWLSKKKERNLKLSSVSRIIPGQRTAVFRRYLQPEKDYLSFSLLYNNGERTLDLICKDKEESELWFEGLKTLISTGKFNWRTTSNLSYFQDGDDLIANGRSFGAALEIASSIVGGRVSISSFSRQPSSRSIRSDAKLERTIMQPRTSIGDGFRVSVSSTPSTSSGGSGPDDIESLGDVYIWGEVWSDGVAPEGYGTQVPSTTDVLIPKPLESIVVLDVQQIASGVCHIALVTRQGEVFTWGKESGGRLGHGSDKDFGHPHLVEFLAVTNVDFVSCGENHTCAVSTSDDVFSWGDGTYNVGLLGHGTEVSHWIPKRVCGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGDRQSVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVMFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHLFTMGGAENGQLGNPLSDGKIPILVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGKGANGRLGHGDIEDRKTPTLVEALRERHVKNISCGSNFTSCICIHKWVSGVDQSVCSGCRQPFGFTRKRHNCYNCGLVHCHACSSRKAMKAALAPTPGKPHRVCDPCYSKLKAVEAGIAAGVNKRVATTQQQSMDGRERLGYGEVRSSRLLSPMMIEPMKFLDTRTNKLGNRYDYSSSMSRASQVPSNLQLKDVAFPNSLGSIQNVLRPTIAQSLQQTAPQISRQASPYAKRPSPPRSGNPGFSRSVIDSLRKTNELLNQETSKLQNQIRSLKQKSDMKDVDIQKLQKNVKEVALLAAEHSSKNKTVKDYFESMIEQLKEISEKLAPENSDSENMRSMLTKAEEFLKENETNTSISSSDSPKVEEQNERNTSISSSDSPKVEEQNERNTSISSSNSPKVEEERIEEKNKVVDEENALKESNNRLSDAKESSESTSNDSKSMEEVQVIEQFEPGVYVTLIVKAGGIKVFKRVRFSKRRFREHQAEEWWTKNKDKVLRKYSSNSQPTNHVPSTTPPPPPPPPAEENIEADASS 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1956 1103 MobiDBLite consensus disorder prediction 921 969 - -
Lal2g1956 1103 PRINTS Chromosome condensation regulator RCC1 signature 295 311 IPR000408 -
Lal2g1956 1103 PRINTS Chromosome condensation regulator RCC1 signature 345 361 IPR000408 -
Lal2g1956 1103 PRINTS Chromosome condensation regulator RCC1 signature 386 402 IPR000408 -
Lal2g1956 1103 PRINTS Chromosome condensation regulator RCC1 signature 402 416 IPR000408 -
Lal2g1956 1103 PRINTS Chromosome condensation regulator RCC1 signature 503 521 IPR000408 -
Lal2g1956 1103 PRINTS Chromosome condensation regulator RCC1 signature 561 582 IPR000408 -
Lal2g1956 1103 SUPERFAMILY PH domain-like 24 131 - -
Lal2g1956 1103 MobiDBLite consensus disorder prediction 210 229 - -
Lal2g1956 1103 ProSiteProfiles PH domain profile. 99 132 IPR001849 -
Lal2g1956 1103 MobiDBLite consensus disorder prediction 787 818 - -
Lal2g1956 1103 Gene3D - 23 136 IPR011993 -
Lal2g1956 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 293 344 IPR000408 -
Lal2g1956 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 566 617 IPR000408 -
Lal2g1956 1103 CDD FYVE_scVPS27p_like 626 680 - -
Lal2g1956 1103 MobiDBLite consensus disorder prediction 1080 1095 - -
Lal2g1956 1103 Gene3D - 211 456 IPR009091 -
Lal2g1956 1103 SUPERFAMILY RCC1/BLIP-II 233 619 IPR009091 -
Lal2g1956 1103 Pfam FYVE zinc finger 618 684 IPR000306 GO:0046872
Lal2g1956 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 462 513 IPR000408 -
Lal2g1956 1103 Coils Coil 975 1002 - -
Lal2g1956 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 693 IPR013083 -
Lal2g1956 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 400 451 IPR000408 -
Lal2g1956 1103 Pfam Pleckstrin homology domain 28 131 IPR001849 -
Lal2g1956 1103 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 23 1078 - -
Lal2g1956 1103 CDD PH_PLC_plant-like 25 132 - -
Lal2g1956 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 293 341 IPR000408 -
Lal2g1956 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 345 395 IPR000408 -
Lal2g1956 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 513 562 IPR000408 -
Lal2g1956 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 464 510 IPR000408 -
Lal2g1956 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 567 614 IPR000408 -
Lal2g1956 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 399 448 IPR000408 -
Lal2g1956 1103 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 23 1078 - -
Lal2g1956 1103 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 279 289 IPR000408 -
Lal2g1956 1103 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 622 684 IPR017455 -
Lal2g1956 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 345 399 IPR000408 -
Lal2g1956 1103 ProSiteProfiles BRX domain profile. 1016 1071 IPR013591 -
Lal2g1956 1103 Coils Coil 820 847 - -
Lal2g1956 1103 Gene3D - 457 617 IPR009091 -
Lal2g1956 1103 SUPERFAMILY FYVE/PHD zinc finger 618 686 IPR011011 -
Lal2g1956 1103 Pfam Transcription factor regulating root and shoot growth via Pin3 1017 1070 IPR013591 -
Lal2g1956 1103 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 438 448 IPR000408 -
Lal2g1956 1103 MobiDBLite consensus disorder prediction 970 1008 - -
Lal2g1956 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 514 565 IPR000408 -
Lal2g1956 1103 MobiDBLite consensus disorder prediction 917 1015 - -
Lal2g1956 1103 SMART fyve_4 616 685 IPR000306 GO:0046872
Lal2g1956 1103 MobiDBLite consensus disorder prediction 1069 1103 - -
Lal2g1956 1103 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1956 Lal-Chr2 21832316 21836925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1956 993 1085 Major Intrinsic Protein MIP AT1G31880 34.409 4.97e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1956 - - gmx:100779684 1494.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1956 2 21832316 21836925 Lal1g2295 1 24858004 24861815 LSH