Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1927 ATGCATAAGTCTTTCAAAGATTCCCTTAAAGCTCTTCAAGCTGATATCCACTTTGCAAATACCTTAGCTTCTGATTATGCGAGTGACCGCGATGGTTCGTGCCTCCAAATGAGATTGTCCTACGGTCCGGCTGCTCAGTTTTTCCTTTTTTTGGTTCAGTGGACTAATTGTCACCTTGCTGGATCCTTGGGATTGCTTAGAATTCTTATATACAAGGCATATAAGGATGGGAAGACAACCATGTCTATTTATGAAAGAAAAGCCACTCTAAGGGAGTTCTATGGTGTGGTTTTTCCCTCTTTGTTGCAACTCCACAGAGGAATAACTGATGTGGATGACAGGAAACAAAAACATATATGCACTACTAAGTACAAGGCGAAAGATGCGACGAGTAAAGGAAAACTGTCCGAAATCGATGCAGAAAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACACCAAGATCGTATTGCCGAATTGCAATCATTCAATGTGTATGAAATGCTACCGAGACTGGCATGCGAGATCGAAATCTTGCCCGTTTTGTCGGGATAGTCTTAAAAGGGTAAACTCGGGGGACCTATGGATCTACATGAGCAACAATGAGATAGATGACTTGAATTCAATAAAGAATGAGAATTTGCAGAGACTATTTATGTACATAGAAAAGTTACCTCTCATTGTGCCAGACCCTCCTATATTCATCTCATATGGTCAACACTGGTGA 729 0.4088 MHKSFKDSLKALQADIHFANTLASDYASDRDGSCLQMRLSYGPAAQFFLFLVQWTNCHLAGSLGLLRILIYKAYKDGKTTMSIYERKATLREFYGVVFPSLLQLHRGITDVDDRKQKHICTTKYKAKDATSKGKLSEIDAEREEECGICMEMNTKIVLPNCNHSMCMKCYRDWHARSKSCPFCRDSLKRVNSGDLWIYMSNNEIDDLNSIKNENLQRLFMYIEKLPLIVPDPPIFISYGQHW 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1927 242 PANTHER RING FINGER PROTEIN 41, 151 1 229 - -
Lal2g1927 242 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Lal2g1927 242 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 229 - -
Lal2g1927 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 193 IPR013083 -
Lal2g1927 242 SUPERFAMILY RING/U-box 134 189 - -
Lal2g1927 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Lal2g1927 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Lal2g1927 242 SMART ring_2 146 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1927 Lal-Chr2 21487076 21489972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1927 94 188 C3H Transcription Factor Family AT5G01960 30.693 2.88e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1927 K25840 - pop:7466068 402.519