Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal2g1921 | ATGGAAATGTCTTCTAGCCCTCGCACCGTTGAAGAGATCTTCAAAGACTATAACGCTCGAAGAATCGGTGTAGTTCGAGCTTTGACTCATGATGTTGATGAATTTTACGGGCTCTGTGATCCTGATAAGGAGAACTTGTGCCTCTATGGACATCCGAATGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCAGCCCTTGGAATCAATTTTGCTAGAGATGGTATGAACCGCAGGGACTGGCTGTCTCTTGTTGCTGTTCACAGTGATTCATGGTTGCTTTCCGTGGCATTTTATCTTGGAGCTCGTCTTAATCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCCACAGTTTTCGAAGTTGTTACGGACAGGAAACCAATTAAGGAAAAGCCCACTGTGGATAGTGGAAGCAAATCTCGAGGAAGCACCAAGAGATCTAATGATGGGCAAGTTAAAAGCAACCCAAGGACTGATGAGGGTTATGAGGAGGAAGAAGATGAGCATAGCGAAACCCTTTGTGGTAGTTGTGGTGGCAATTACGTCGGGGACGAGTTTTGGATCGGCTGTGATATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACACCTGCAAAGGCTGACAGCATTAAGCAATACAAATGCCCTACATGCAGCTTAAAGAAGGGTAGTAGGCCTTAG | 720 | 0.4528 | MEMSSSPRTVEEIFKDYNARRIGVVRALTHDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPIKEKPTVDSGSKSRGSTKRSNDGQVKSNPRTDEGYEEEEDEHSETLCGSCGGNYVGDEFWIGCDICERWFHGKCVKITPAKADSIKQYKCPTCSLKKGSRP | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal2g1921 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 182 | 232 | IPR013083 | - | |
| Lal2g1921 | 239 | MobiDBLite | consensus disorder prediction | 140 | 184 | - | - | |
| Lal2g1921 | 239 | CDD | PHD_AL_plant | 184 | 234 | IPR044104 | - | |
| Lal2g1921 | 239 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 3 | 236 | - | - | |
| Lal2g1921 | 239 | Pfam | PHD-finger | 185 | 232 | IPR019787 | - | |
| Lal2g1921 | 239 | ProSitePatterns | Zinc finger PHD-type signature. | 185 | 231 | IPR019786 | - | |
| Lal2g1921 | 239 | SUPERFAMILY | FYVE/PHD zinc finger | 173 | 236 | IPR011011 | - | |
| Lal2g1921 | 239 | PANTHER | CPG BINDING PROTEIN | 3 | 236 | IPR045104 | GO:0006355|GO:0042393 | |
| Lal2g1921 | 239 | SMART | PHD_3 | 184 | 232 | IPR001965 | - | |
| Lal2g1921 | 239 | MobiDBLite | consensus disorder prediction | 148 | 162 | - | - | |
| Lal2g1921 | 239 | ProSiteProfiles | Zinc finger PHD-type profile. | 182 | 234 | IPR019787 | - | |
| Lal2g1921 | 239 | Pfam | Alfin | 9 | 134 | IPR021998 | GO:0006355|GO:0042393 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal2g1921 | Lal-Chr2 | 21427295 | 21431418 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal2g1921 | 4 | 236 | Alfin-like Transcription Factor Family | AT5G05610 | 77.447 | 3.61e-118 | 335 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | Alfin-like | Lal2g1921 | Alfin | 3.9e-68 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal2g1921 | - | - | gmx:100793126 | 439.884 |
Event-related genes