Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal2g1914 | ATGGTGATGAAAGAGAGTGATGAGGAGCTGGCTTTGTTTCTTGAGATGAGGAGGAGAGAGAAAGATAATGAGAAAAATAATCTTCTCCTTCTTCAGAACTTTGATGAATTTGATTTGTCCAATTTGGAATCAAATCATGGTGGTGCTAATATTTCCATGATGGTATCTTCATTGCCAACAAGGAAGACAATGGCTGAAGAGTTATTGAATTCAGAAAATGACAAGTCTGATTATGATTGGCTTCTTGCGCCACCCGATTCGCCCCTTTTCCCTTCTTTAGAGAAGGAATCACATATATCAATAAAGAGTGGAATAGAGATACTGGATCGTCGTCCAACAGCTCTAAAACCTAGGGTATCTAATATCCAAGCTGAACCGGCTTCAAGAAGCAATGTACCCTCTAAGCATCATGCACCAAAGCCTGGACTTGGTTCTTCTACTGATGGTAATAGGAGACCTTCACCATCGAGGGGTCCGACCGCAGCCACTTCCAGATCCTCATCATCATCTGGAAGGACAACATTGCCTTCATCAAACAAATCCTCTAGGCCCTCTACACCTACCTCCCGGAACACTTTAACAGCCTCTACAAAGCCAATAACTACCCAGCCTTATATGGCAGCTCGTAAGATATCTCAAAGATCAGTGACTCCTACCCTCCTATCATCAACCACTTCAAGGGCATTTGGAGTATCTGCTCCTCCTACTCGACCTTCATCAGCATCAAAAGCACGCCCCGTAGTTGCAAAGCATTCAGTGCAATCACGGGGCATCTCTCCACCGGTAAAATCTAGACCTTGGGAGCCTTCACAAATGCCTGGTTACTCTCATGATGCTCCTCCAAATTTGAAGACGTCACTGCCAGAAAGATCAGCTTCAGTCACTAGGACTAGGTCTCGAGTACCAAACTCTAGATCATCTTCTGTTGAGGCCGGTAGCAATGGAAAATCTAAGAGGCAGTCAATAACGCCTTCAAAAGGAAGGGATTCATCTGGGTATGGCCTGAGTAATCAATGCTCGATGCAAGCCTTGAGTAGAGCTCGTTTCACTGATAGCGATAACGAAAGTTCAGTTGTAATCGGGACAAAAATGGTTGAAAGAGTAGTAAACATGCGAAAACAGGCACCAGCAAAGAATGAAGACCATCATTCTGCTCATAGCAATTCACATGGAAAGCCTTCATCTTTTGATAACTCTGGATTTGGATTAACTCTTTCAAAGAAGTCCTTAGATATGGCAATGATACATATGGATATAAGGCGAAGCATGCAGGGTAGTAGTTTGCGCCCGTTTGTGACAAACATTCGAGGTTCCTCCTTGTACAGTTCAAGATCAGTTAGTTCATCGAAGAGCAGTACAATCAGTATTTCTGATACTAGCAGCACTGCTAGCTCTGAACCAAGTGTAAATAACCACTCCATATCTTATGATGGAAGTGAGGTTGAAGAAAATGATTTTGGAAGTGAGAGGGGAATCTCTTCCTCTATGGAATCATCAAGAATAGAAATGATGAGTACACATTACAAACGAGAGGAAATCGGGTTGAAAAGAGGTTGTTTGATGACGACTCGAATAGCACCTGGTGTAGGAGCAAACTTGCTTGGTCAACACTCTGCGGAGAGGAATCAAGATGCTACTGCTTATGTCGGCAATCTCGACCCCCAGATATCTGAGGAGTTATTATGGGAGCTATTTGTTCAGGCAGGTCCAGTTGTTAATGTCTATGTCCCGAAGGACAGAGTGACCAACCAGCATCAAGGTTATGGATTTGTTGAGTTTCGGAGTGAAGAAGATGCTGACTATGCCATTAAAGTGCTTAACATGATTAAGCTCTATGGAAAACCAATACGTGTAAATAAGGCATCTCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAATCTTGATCCCGATGTAGATGAGAAGCTCCTATATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCACGTGGTTTTGGCTTCATCAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACTGTGTCATATGCTTATAAGAAAGACACCAAAGGGGAAAGGCATGGTACTCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCAACTGCACAGAAGAGCAGGCCTCATACTTTATTTGCCAGTGGGCCTCCAACACTTCCAAATGCTCCTCAGGCTAATGGTACCATTGCTGCTCCCGTGCCTCCTCGACCCTTTGCTAATGGAATTCCTCCTCCTATTCCTGCCTTGCGTCCACCACCCCCTCAAGCTGCGACATTCCAGCCTATGCCAGTAGCCGGGCCACCAGTATGGCATCAACAGCAGCCAGGTCAAATGCCGCATGGCATGCCTCCTCCTCCTCCTCAAATGCAGCAGTTCAGGCCACCTCATCCTGGTATGCCGATGCCACCACCTCCACAAGGTGTTCCGGGTCCTCAAAGGCCTCTTCCCCCACCATCAGTAATGGCAGGCCAACAGCCACCCGTTTGGCGACCACCACCACCACCTCAGCAACAGAGTGGAATGCCATATGGTTATCCTCAGTCGTCAATGCCACCACCTCCCAATAATCCTCATATGCAACCACCTCCAAGTTGA | 2688 | 0.4509 | MVMKESDEELALFLEMRRREKDNEKNNLLLLQNFDEFDLSNLESNHGGANISMMVSSLPTRKTMAEELLNSENDKSDYDWLLAPPDSPLFPSLEKESHISIKSGIEILDRRPTALKPRVSNIQAEPASRSNVPSKHHAPKPGLGSSTDGNRRPSPSRGPTAATSRSSSSSGRTTLPSSNKSSRPSTPTSRNTLTASTKPITTQPYMAARKISQRSVTPTLLSSTTSRAFGVSAPPTRPSSASKARPVVAKHSVQSRGISPPVKSRPWEPSQMPGYSHDAPPNLKTSLPERSASVTRTRSRVPNSRSSSVEAGSNGKSKRQSITPSKGRDSSGYGLSNQCSMQALSRARFTDSDNESSVVIGTKMVERVVNMRKQAPAKNEDHHSAHSNSHGKPSSFDNSGFGLTLSKKSLDMAMIHMDIRRSMQGSSLRPFVTNIRGSSLYSSRSVSSSKSSTISISDTSSTASSEPSVNNHSISYDGSEVEENDFGSERGISSSMESSRIEMMSTHYKREEIGLKRGCLMTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNAPQANGTIAAPVPPRPFANGIPPPIPALRPPPPQAATFQPMPVAGPPVWHQQQPGQMPHGMPPPPPQMQQFRPPHPGMPMPPPPQGVPGPQRPLPPPSVMAGQQPPVWRPPPPPQQQSGMPYGYPQSSMPPPPNNPHMQPPPS | 895 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 116 | 336 | - | - | |
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 713 | 895 | - | - | |
Lal2g1914 | 895 | PANTHER | GASTRIC MUCIN-LIKE PROTEIN | 1 | 496 | - | - | |
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 767 | 792 | - | - | |
Lal2g1914 | 895 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 634 | 704 | IPR000504 | GO:0003723 | |
Lal2g1914 | 895 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 548 | 617 | IPR000504 | GO:0003723 | |
Lal2g1914 | 895 | Gene3D | - | 536 | 630 | IPR012677 | - | |
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 442 | 498 | - | - | |
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 728 | 756 | - | - | |
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 147 | 239 | - | - | |
Lal2g1914 | 895 | PRINTS | Proline rich extensin signature | 732 | 748 | - | - | |
Lal2g1914 | 895 | PRINTS | Proline rich extensin signature | 763 | 775 | - | - | |
Lal2g1914 | 895 | PRINTS | Proline rich extensin signature | 778 | 799 | - | - | |
Lal2g1914 | 895 | PRINTS | Proline rich extensin signature | 810 | 826 | - | - | |
Lal2g1914 | 895 | PRINTS | Proline rich extensin signature | 832 | 849 | - | - | |
Lal2g1914 | 895 | PRINTS | Proline rich extensin signature | 873 | 895 | - | - | |
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 809 | 895 | - | - | |
Lal2g1914 | 895 | SUPERFAMILY | RNA-binding domain, RBD | 545 | 715 | IPR035979 | GO:0003676 | |
Lal2g1914 | 895 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 545 | 623 | IPR000504 | GO:0003723 | |
Lal2g1914 | 895 | PANTHER | GPI-ANCHORED PROTEIN PB15E9.01C-RELATED | 1 | 496 | - | - | |
Lal2g1914 | 895 | SMART | rrm1_1 | 546 | 619 | IPR000504 | GO:0003723 | |
Lal2g1914 | 895 | SMART | rrm1_1 | 633 | 707 | IPR000504 | GO:0003723 | |
Lal2g1914 | 895 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 632 | 711 | IPR000504 | GO:0003723 | |
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 286 | 336 | - | - | |
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 375 | 400 | - | - | |
Lal2g1914 | 895 | CDD | RRM2_SF3B4 | 631 | 713 | IPR034159 | - | |
Lal2g1914 | 895 | Gene3D | - | 631 | 720 | IPR012677 | - | |
Lal2g1914 | 895 | CDD | RRM1_SF3B4 | 548 | 620 | IPR034158 | - | |
Lal2g1914 | 895 | MobiDBLite | consensus disorder prediction | 442 | 477 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal2g1914 | Lal-Chr2 | 21353829 | 21363382 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal2g1914 | 538 | 793 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.058 | 1.27e-16 | 82.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal2g1914 | K12831 | - | aprc:113863389 | 610.527 |