Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1914 ATGGTGATGAAAGAGAGTGATGAGGAGCTGGCTTTGTTTCTTGAGATGAGGAGGAGAGAGAAAGATAATGAGAAAAATAATCTTCTCCTTCTTCAGAACTTTGATGAATTTGATTTGTCCAATTTGGAATCAAATCATGGTGGTGCTAATATTTCCATGATGGTATCTTCATTGCCAACAAGGAAGACAATGGCTGAAGAGTTATTGAATTCAGAAAATGACAAGTCTGATTATGATTGGCTTCTTGCGCCACCCGATTCGCCCCTTTTCCCTTCTTTAGAGAAGGAATCACATATATCAATAAAGAGTGGAATAGAGATACTGGATCGTCGTCCAACAGCTCTAAAACCTAGGGTATCTAATATCCAAGCTGAACCGGCTTCAAGAAGCAATGTACCCTCTAAGCATCATGCACCAAAGCCTGGACTTGGTTCTTCTACTGATGGTAATAGGAGACCTTCACCATCGAGGGGTCCGACCGCAGCCACTTCCAGATCCTCATCATCATCTGGAAGGACAACATTGCCTTCATCAAACAAATCCTCTAGGCCCTCTACACCTACCTCCCGGAACACTTTAACAGCCTCTACAAAGCCAATAACTACCCAGCCTTATATGGCAGCTCGTAAGATATCTCAAAGATCAGTGACTCCTACCCTCCTATCATCAACCACTTCAAGGGCATTTGGAGTATCTGCTCCTCCTACTCGACCTTCATCAGCATCAAAAGCACGCCCCGTAGTTGCAAAGCATTCAGTGCAATCACGGGGCATCTCTCCACCGGTAAAATCTAGACCTTGGGAGCCTTCACAAATGCCTGGTTACTCTCATGATGCTCCTCCAAATTTGAAGACGTCACTGCCAGAAAGATCAGCTTCAGTCACTAGGACTAGGTCTCGAGTACCAAACTCTAGATCATCTTCTGTTGAGGCCGGTAGCAATGGAAAATCTAAGAGGCAGTCAATAACGCCTTCAAAAGGAAGGGATTCATCTGGGTATGGCCTGAGTAATCAATGCTCGATGCAAGCCTTGAGTAGAGCTCGTTTCACTGATAGCGATAACGAAAGTTCAGTTGTAATCGGGACAAAAATGGTTGAAAGAGTAGTAAACATGCGAAAACAGGCACCAGCAAAGAATGAAGACCATCATTCTGCTCATAGCAATTCACATGGAAAGCCTTCATCTTTTGATAACTCTGGATTTGGATTAACTCTTTCAAAGAAGTCCTTAGATATGGCAATGATACATATGGATATAAGGCGAAGCATGCAGGGTAGTAGTTTGCGCCCGTTTGTGACAAACATTCGAGGTTCCTCCTTGTACAGTTCAAGATCAGTTAGTTCATCGAAGAGCAGTACAATCAGTATTTCTGATACTAGCAGCACTGCTAGCTCTGAACCAAGTGTAAATAACCACTCCATATCTTATGATGGAAGTGAGGTTGAAGAAAATGATTTTGGAAGTGAGAGGGGAATCTCTTCCTCTATGGAATCATCAAGAATAGAAATGATGAGTACACATTACAAACGAGAGGAAATCGGGTTGAAAAGAGGTTGTTTGATGACGACTCGAATAGCACCTGGTGTAGGAGCAAACTTGCTTGGTCAACACTCTGCGGAGAGGAATCAAGATGCTACTGCTTATGTCGGCAATCTCGACCCCCAGATATCTGAGGAGTTATTATGGGAGCTATTTGTTCAGGCAGGTCCAGTTGTTAATGTCTATGTCCCGAAGGACAGAGTGACCAACCAGCATCAAGGTTATGGATTTGTTGAGTTTCGGAGTGAAGAAGATGCTGACTATGCCATTAAAGTGCTTAACATGATTAAGCTCTATGGAAAACCAATACGTGTAAATAAGGCATCTCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAATCTTGATCCCGATGTAGATGAGAAGCTCCTATATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCACGTGGTTTTGGCTTCATCAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACTGTGTCATATGCTTATAAGAAAGACACCAAAGGGGAAAGGCATGGTACTCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCAACTGCACAGAAGAGCAGGCCTCATACTTTATTTGCCAGTGGGCCTCCAACACTTCCAAATGCTCCTCAGGCTAATGGTACCATTGCTGCTCCCGTGCCTCCTCGACCCTTTGCTAATGGAATTCCTCCTCCTATTCCTGCCTTGCGTCCACCACCCCCTCAAGCTGCGACATTCCAGCCTATGCCAGTAGCCGGGCCACCAGTATGGCATCAACAGCAGCCAGGTCAAATGCCGCATGGCATGCCTCCTCCTCCTCCTCAAATGCAGCAGTTCAGGCCACCTCATCCTGGTATGCCGATGCCACCACCTCCACAAGGTGTTCCGGGTCCTCAAAGGCCTCTTCCCCCACCATCAGTAATGGCAGGCCAACAGCCACCCGTTTGGCGACCACCACCACCACCTCAGCAACAGAGTGGAATGCCATATGGTTATCCTCAGTCGTCAATGCCACCACCTCCCAATAATCCTCATATGCAACCACCTCCAAGTTGA 2688 0.4509 MVMKESDEELALFLEMRRREKDNEKNNLLLLQNFDEFDLSNLESNHGGANISMMVSSLPTRKTMAEELLNSENDKSDYDWLLAPPDSPLFPSLEKESHISIKSGIEILDRRPTALKPRVSNIQAEPASRSNVPSKHHAPKPGLGSSTDGNRRPSPSRGPTAATSRSSSSSGRTTLPSSNKSSRPSTPTSRNTLTASTKPITTQPYMAARKISQRSVTPTLLSSTTSRAFGVSAPPTRPSSASKARPVVAKHSVQSRGISPPVKSRPWEPSQMPGYSHDAPPNLKTSLPERSASVTRTRSRVPNSRSSSVEAGSNGKSKRQSITPSKGRDSSGYGLSNQCSMQALSRARFTDSDNESSVVIGTKMVERVVNMRKQAPAKNEDHHSAHSNSHGKPSSFDNSGFGLTLSKKSLDMAMIHMDIRRSMQGSSLRPFVTNIRGSSLYSSRSVSSSKSSTISISDTSSTASSEPSVNNHSISYDGSEVEENDFGSERGISSSMESSRIEMMSTHYKREEIGLKRGCLMTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNAPQANGTIAAPVPPRPFANGIPPPIPALRPPPPQAATFQPMPVAGPPVWHQQQPGQMPHGMPPPPPQMQQFRPPHPGMPMPPPPQGVPGPQRPLPPPSVMAGQQPPVWRPPPPPQQQSGMPYGYPQSSMPPPPNNPHMQPPPS 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1914 895 MobiDBLite consensus disorder prediction 116 336 - -
Lal2g1914 895 MobiDBLite consensus disorder prediction 713 895 - -
Lal2g1914 895 PANTHER GASTRIC MUCIN-LIKE PROTEIN 1 496 - -
Lal2g1914 895 MobiDBLite consensus disorder prediction 767 792 - -
Lal2g1914 895 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 634 704 IPR000504 GO:0003723
Lal2g1914 895 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 548 617 IPR000504 GO:0003723
Lal2g1914 895 Gene3D - 536 630 IPR012677 -
Lal2g1914 895 MobiDBLite consensus disorder prediction 442 498 - -
Lal2g1914 895 MobiDBLite consensus disorder prediction 728 756 - -
Lal2g1914 895 MobiDBLite consensus disorder prediction 147 239 - -
Lal2g1914 895 PRINTS Proline rich extensin signature 732 748 - -
Lal2g1914 895 PRINTS Proline rich extensin signature 763 775 - -
Lal2g1914 895 PRINTS Proline rich extensin signature 778 799 - -
Lal2g1914 895 PRINTS Proline rich extensin signature 810 826 - -
Lal2g1914 895 PRINTS Proline rich extensin signature 832 849 - -
Lal2g1914 895 PRINTS Proline rich extensin signature 873 895 - -
Lal2g1914 895 MobiDBLite consensus disorder prediction 809 895 - -
Lal2g1914 895 SUPERFAMILY RNA-binding domain, RBD 545 715 IPR035979 GO:0003676
Lal2g1914 895 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 545 623 IPR000504 GO:0003723
Lal2g1914 895 PANTHER GPI-ANCHORED PROTEIN PB15E9.01C-RELATED 1 496 - -
Lal2g1914 895 SMART rrm1_1 546 619 IPR000504 GO:0003723
Lal2g1914 895 SMART rrm1_1 633 707 IPR000504 GO:0003723
Lal2g1914 895 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 632 711 IPR000504 GO:0003723
Lal2g1914 895 MobiDBLite consensus disorder prediction 286 336 - -
Lal2g1914 895 MobiDBLite consensus disorder prediction 375 400 - -
Lal2g1914 895 CDD RRM2_SF3B4 631 713 IPR034159 -
Lal2g1914 895 Gene3D - 631 720 IPR012677 -
Lal2g1914 895 CDD RRM1_SF3B4 548 620 IPR034158 -
Lal2g1914 895 MobiDBLite consensus disorder prediction 442 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1914 Lal-Chr2 21353829 21363382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1914 538 793 Eukaryotic Initiation Factors Gene Family AT4G34110 28.058 1.27e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1914 K12831 - aprc:113863389 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1914 2 21353829 21363382 Lal2g1914 2 21353829 21363382 ECH
Lal2g1914 2 21353829 21363382 Lal9g1655 9 18890718 18894943 LSH