Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1901 ATGAATAGTGGGATTGAAGTTCTGTCTCCATCTTCCAATATCCAAACATCAAATTGGTTAATGTTTCAAGAAAGCAATGGAGCAAAATGGACTCAACAAGAGAACAAATTGTTTGAAAATGCTTTGGCTTTGTATGATAAGGACACACCAGATAGATGGCTAAGGGTAGCAGCAATGATTCCAACCAAAACTGTTGGTGATGTGATAAAACAGTACAAGGAACTAGAAGAAGATGTTAGTGTCATTGAAGCAGGTTTATTCCCAGTTCCTGGTTATAGTACTAGTTCTTTCACACTGGAGGGAGTTGAGTTAAACAATCATGGCTTTGAGCAATTTTATAGGGTTGGTGGGAAAAGGGGTGCTTCCATTAGGCCATTTGAGCAAGAAAGAAAGAAGGGTGTGCCATGGACTGAAGAGGAGCATAGGTTATTTTTGGTGGGTCTTAAGAAATATGGCAAAGGGGATTGGAGAAACATTTCTAGGAAGTTTGTGACCACAAGGACACCAACTCAAGTTGCAAGTCATGCTCAAAAATATTTCATTAGGCAACTTACAGGATCTAAAGATAAGAGAAGATCAAGTATCCATGATATCACAATGGTTAATCTCTCAGAAATCGAATTTCCTTCATCAAATGATGACATACCTTCTTATACAGATCACTCGGTCAAGGGTTCGAATCGACACCAGAATCGGATAGTATCTAACATGATCAAACAGGAATATGATTGGAACTTAACATATGAGGGTGGTATGCCAAAGGTTTTAAGTTCAACATATGGAAACAAGTTTGATGCATCAATGATTGAGATTTCTTCATATGGAACTAAACCACAGGAGCATAATTTACTCAGAGGCACTCTCTATGGATGCCAATTTGCACCTTATGAATCAATGCAATATCAATGA 909 0.3806 MNSGIEVLSPSSNIQTSNWLMFQESNGAKWTQQENKLFENALALYDKDTPDRWLRVAAMIPTKTVGDVIKQYKELEEDVSVIEAGLFPVPGYSTSSFTLEGVELNNHGFEQFYRVGGKRGASIRPFEQERKKGVPWTEEEHRLFLVGLKKYGKGDWRNISRKFVTTRTPTQVASHAQKYFIRQLTGSKDKRRSSIHDITMVNLSEIEFPSSNDDIPSYTDHSVKGSNRHQNRIVSNMIKQEYDWNLTYEGGMPKVLSSTYGNKFDASMIEISSYGTKPQEHNLLRGTLYGCQFAPYESMQYQ 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1901 302 CDD SANT 29 75 IPR001005 -
Lal2g1901 302 SUPERFAMILY Homeodomain-like 29 83 IPR009057 -
Lal2g1901 302 Gene3D - 22 89 - -
Lal2g1901 302 ProSiteProfiles SANT domain profile. 25 80 IPR017884 -
Lal2g1901 302 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Lal2g1901 302 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 299 IPR043363 -
Lal2g1901 302 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Lal2g1901 302 Gene3D - 134 184 - -
Lal2g1901 302 CDD SANT 135 180 IPR001005 -
Lal2g1901 302 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Lal2g1901 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Lal2g1901 302 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Lal2g1901 302 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 6 299 - -
Lal2g1901 302 SMART sant 132 182 IPR001005 -
Lal2g1901 302 SMART sant 26 78 IPR001005 -
Lal2g1901 302 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1901 Lal-Chr2 21263653 21266258 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal2g1901 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1901 - - var:108329798 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1901 2 21263653 21266258 Lal22g0242 22 1511667 1513969 ECH
Lal2g1901 2 21263653 21266258 Lal3g0575 3 4350942 4353198 ECH
Lal2g1901 2 21263653 21266258 Lal2g1901 2 21263653 21266258 ECH
Lal2g1901 2 21263653 21266258 Lal22g0370 22 2383737 2386250 ECH
Lal2g1901 2 21263653 21266258 Lal5g0915 5 10961450 10963494 ECH
Lal2g1901 2 21263653 21266258 Lal1g2221 1 24169617 24171443 LSH