Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1893 ATGCTTCAGATTCGGCTTAGTAAGGTTCCTGTCTCAGAAGGATCAGCAGGGGTGAAGCTGTCACCTGCGGAGACTGTCATGGTTGCTTGCCCAGATCATCTAGTCCTCGCTGATCTCCCTGTTGCAAAGGGCATTGGAGGGGCTACTGCTGTTTCCTTTGTTAAGACATCAGGACGTAGATCCCGCCGCCAGCTTGGTGAGCGAGTGCATTTCTGTGTTCGTTGTGATTTCCCAATCTCTATCTATGGACGACTGAGCCCTTGTGAGCATGCCTTCTGTCTTGATTGTGCTAGAAGTGATTCACTGTGCTATCTGTGTGACGAACGAATCCAGAAGATTCAGACAATCAAATTGATGGAAGGAATCCTCATATGTGCAGGTCCTCACTGTCTGAAATCTTTCCTGAAGAAGGCTGATTTTGAATCTCATATCCAAGACATCCATGCTAGCCTTCTTCGACCCAATGCAGACAAAGAAGATGGAAACGAGTCAGAGGCGCAGAGTGTCAGGCAATCTACAGTTTCAGATTCCACTGCTCGAGGTCCGCAAAGACCAGTTTTTTCTCCCGGTTTGAATCCACAGCTCCATGATCAGGAAGAAAAAACTCATCAACAACCAAGAGATCAACCACCTTCAAGGCCAAATATGCAGTCAAAGCCACCATATTTTGGACAACAACATCACCCTTCGGATACCCCTTCCGGCTCCTTTGGAGGTAGTCAACAGGGCTTACATCAACAAAGTTTCGATATGCACCATCCGTCGCAAGAACCTTCACAGTTTTCAGACAGGCTGCAATCAGTTGGTCCAGAGACCCAAATTTCAGAGTATCCACCAATGCACTCAGGCCAGCCTCCCAACATCCCCACACAGGTTACTTCGAACCCAATGCTGAACCCTCCTATGCCGTTTGGGTACTGTCCTTACCCACAGGAAAGAGGTCAACAATTTTATGCTGCTACCTATGATAATGTTCCTAGGCAGGACTCAGCTTCTGATATAGGTGGGGACCAGAGTTCATTACTCAGTTTCCCACAAGGTGGTGTCCCGAGTGGCCCACAATTTCCAGGAAATTATCCCCAGCCCTGGCATGCTGGAATGGCTGGTGCACCTTTTGAACAAGGGCAGGGTGGTATGGTACTGGATCCAAGGGATGCCAAAGGTGTATTGGCACCACAGCATGTGGCCCTCCCACCACCCCCGCCACAGCCCCACATGTCGCATATGAAACAGAATTACTATTCCGGTGAGGGTGGACATGATGGTCAGGGTTATGGGTGGCAGCAGCATGATAACCGTGATAGCTTTGGTGGCCAAGGCTAG 1323 0.4936 MLQIRLSKVPVSEGSAGVKLSPAETVMVACPDHLVLADLPVAKGIGGATAVSFVKTSGRRSRRQLGERVHFCVRCDFPISIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKLMEGILICAGPHCLKSFLKKADFESHIQDIHASLLRPNADKEDGNESEAQSVRQSTVSDSTARGPQRPVFSPGLNPQLHDQEEKTHQQPRDQPPSRPNMQSKPPYFGQQHHPSDTPSGSFGGSQQGLHQQSFDMHHPSQEPSQFSDRLQSVGPETQISEYPPMHSGQPPNIPTQVTSNPMLNPPMPFGYCPYPQERGQQFYAATYDNVPRQDSASDIGGDQSSLLSFPQGGVPSGPQFPGNYPQPWHAGMAGAPFEQGQGGMVLDPRDAKGVLAPQHVALPPPPPQPHMSHMKQNYYSGEGGHDGQGYGWQQHDNRDSFGGQG 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1893 440 MobiDBLite consensus disorder prediction 392 440 - -
Lal2g1893 440 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Lal2g1893 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 413 - -
Lal2g1893 440 MobiDBLite consensus disorder prediction 166 182 - -
Lal2g1893 440 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Lal2g1893 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Lal2g1893 440 MobiDBLite consensus disorder prediction 208 298 - -
Lal2g1893 440 MobiDBLite consensus disorder prediction 152 299 - -
Lal2g1893 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 413 IPR040383 GO:0016567|GO:0061630
Lal2g1893 440 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1893 Lal-Chr2 21209267 21212626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1893 1 437 C2H2 Transcription Factor Family AT5G01160 44.369 5.67e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1893 K15685 - gmx:100817582 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1893 2 21209267 21212626 Lal2g1893 2 21209267 21212626 ECH
Lal2g1893 2 21209267 21212626 Lal1g2218 1 24124266 24128171 LSH