Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1884 ATGTCAAATTTTCAGATGTCACGTGTTGATTTAGAGAAAGGGCATAATCGTGATTCTGTTGTTGGAAGTGAGGTGAGTGCTGAAGGGAGGAGCCAATGCTTATCTGATGCAGATGATGGTTCATGCCACTCTCATTTCTATTCAATAAATGGTGGTGAGTTTGATGATTATAACTTAGATTGTGTTTCTGATATTGAGGTTGAAGTTCAGGTTGATGGTGGTGTTGCTGATACTGAAAGAGCTTCTTCTGTTACTGATTGTTCTGTGGAGGTTGAAATTGCAAGTGTGGTTCCTGAGATTAAGGTGCATTTGGGTAATAAAGTGGAGAAAGATTGTAGGATTTGTCACATGGGTTTAGAGAGTGATATTCATGAATCTGGAGTTCCAATTGAATTGGGTTGTTGTTGTAAGGATGATTTAGCTGTAGCTCACAAGCACTGTGCTGAAACCTGGTTCAAGATTAAAGGGAATAGGACATGTGAAATTTGCCGTTGTGTTGCACAAAATATTTCTGGACCAAACGAGGAATCGACAGAGCATTCAAGTAACTACGCAATTACAGCAGCCATAATCTCAGTACCTGTTTCTCCAGCCGAGCCTCCAAGATTTTGGCAAGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGCATAGTTTTCATATTTGTCATATCATGGCTTTTTCGCATTAAAGTGCCAACGTAA 702 0.4017 MSNFQMSRVDLEKGHNRDSVVGSEVSAEGRSQCLSDADDGSCHSHFYSINGGEFDDYNLDCVSDIEVEVQVDGGVADTERASSVTDCSVEVEIASVVPEIKVHLGNKVEKDCRICHMGLESDIHESGVPIELGCCCKDDLAVAHKHCAETWFKIKGNRTCEICRCVAQNISGPNEESTEHSSNYAITAAIISVPVSPAEPPRFWQGHRFLNFLLACIVFIFVISWLFRIKVPT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1884 233 CDD RING_CH-C4HC3_MARCH 112 164 - -
Lal2g1884 233 PANTHER ZINC FINGER, RING-CH-TYPE 5 232 - -
Lal2g1884 233 SUPERFAMILY RING/U-box 107 166 - -
Lal2g1884 233 ProSiteProfiles Zinc finger RING-CH-type profile. 104 170 IPR011016 GO:0008270
Lal2g1884 233 PANTHER OS01G0850200 PROTEIN 5 232 - -
Lal2g1884 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 174 IPR013083 -
Lal2g1884 233 Pfam RING-variant domain 112 163 IPR011016 GO:0008270
Lal2g1884 233 SMART ringv_2 111 164 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1884 Lal-Chr2 21128523 21131437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1884 75 233 C3H Transcription Factor Family AT5G05830 56.173 1.79e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1884 - - gmx:100808666 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1884 2 21128523 21131437 Lal18g1350 18 15923461 15925499 ECH
Lal2g1884 2 21128523 21131437 Lal22g0243 22 1515215 1517568 ECH
Lal2g1884 2 21128523 21131437 Lal2g1085 2 7644025 7649673 ECH
Lal2g1884 2 21128523 21131437 Lal2g1884 2 21128523 21131437 ECH
Lal2g1884 2 21128523 21131437 Lal9g1638 9 18783854 18787370 LSH