Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1871 ATGGCTGCTGAGGGCTTTGAACCCTACCATGTTCCTCAACAAAGCAGAAGAGAAAAGCTTAGAGTTCTAGCTCACAACCAACCTGAATCCACATCTTTATTCCCTCTCTTTGATCCTTCACTTATTCCATCTGATTTGTTAACTTGTACTCCAAACCAACAAGGTCACATGATGTTCCACAACAATAATATTCTTCTTTCTAGAGAAAACCAAGGTTGTAGTAGTGGTGAAAAGGAAGAAGTTTCCAATTTTATGATGGGATTTTCAAGGGTTGTGAATGCTTCTTCTTGTTCTTCTTCTTCATACTTGGACTCTTCAATTCAAGTTATTAACAATAACCCCTTTCTTTATAACCAACCTCAAGCCTTTCAAAACCTTAGTAGTAGTGAAATGATGGTGTTTAAGCCCGAACCATTGTCTTTGTCTCTCTCATCTCACATCAACAACAATAATACTCAATACCCATATGGTTGTGCCTCAAATGAAGTTTTTTCTAGGAACATAGTTCCACTTGGACCGTTTACTGGTTATGCTATGATATTAAAGGGATCTAGGTTCTTGAAGCCTGCACAACAATTATTGGAAGAGGTATGTGGTTTTGGGGTTCATGGAATTTACACTGAGAAGATTGCTGCTGATGCAACTTTGATGGAACCTCCTCCTATGGAGAGTTTAAGTGCTGGTGGAATAGTTGGTGTGGATGATGATCCAATGGGGTATGGAAATGAAAGTAGGAAGCAGAAGCCAAGACTCTTAACCATGCTTGATGAGGTTTACAAGCGGTACAAGCAGTATTATCAACAGATGCAAGCTGTAGTAACTTCATTTGAGTATGTTGCCGGGCTCGGTAATGCAGCACCATATGCAGGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATAACTGATCAGATTCAGTTTATCAATAAGACACAGTTTCAGGTAAGCAATAATAGAAAAGATAGAGGAGGCCCTTACAGTCATCGACCACATGGGTTTCTCGAGCACCAACAACAACCTGTTTGGCGACCTCAAAGAGGTCTCCCGGAGCGTGCTGTCAGTGTTCTCAGGGCATGGTTGTATGATCACTTTCTCCACCCTTACCCGACTGACACCGACAAGTTAATGTTGGCTAAACAAACTGGTCTATCTCGTAGTCAGGTGTCAAATTGGTTTATTAATGCGAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACATATGCTAGAATCACAACAAGCTCAAAAAAGTTCTCAAAGGGAAGATCTTAGTATGAACAAGTTGATTCATAATCATGTAGCTTCAGATCATCATAGTTCTCTTGTTAGTCATGAGAATCCATGTACCTCAACTAGGAATGAATTTCCTAACACTAACATTAATCATCAAGTGGGTATAGGAGGAAGCATAGGGAGTGTTGGTAATGGTATATCACTTACACTTGGTCTTCATCAAAATCATCAAGGGATTGGGTTATCTGAACCCTTTCCTATGAATGCAGCTCAACGTTTTGGCCTGAACCTTGATCCTGAAGGCTGTGTTATAAGCAGTTTTGAATCACAAAATAGGCTTTTTGGAAGAGATGTTATTGAAGGACAGCTTTTGCATGATTTGTAG 1638 0.3987 MAAEGFEPYHVPQQSRREKLRVLAHNQPESTSLFPLFDPSLIPSDLLTCTPNQQGHMMFHNNNILLSRENQGCSSGEKEEVSNFMMGFSRVVNASSCSSSSYLDSSIQVINNNPFLYNQPQAFQNLSSSEMMVFKPEPLSLSLSSHINNNNTQYPYGCASNEVFSRNIVPLGPFTGYAMILKGSRFLKPAQQLLEEVCGFGVHGIYTEKIAADATLMEPPPMESLSAGGIVGVDDDPMGYGNESRKQKPRLLTMLDEVYKRYKQYYQQMQAVVTSFEYVAGLGNAAPYAGLAINAMSKHFRCLKNAITDQIQFINKTQFQVSNNRKDRGGPYSHRPHGFLEHQQQPVWRPQRGLPERAVSVLRAWLYDHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLESQQAQKSSQREDLSMNKLIHNHVASDHHSSLVSHENPCTSTRNEFPNTNINHQVGIGGSIGSVGNGISLTLGLHQNHQGIGLSEPFPMNAAQRFGLNLDPEGCVISSFESQNRLFGRDVIEGQLLHDL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1871 545 SUPERFAMILY Homeodomain-like 350 415 IPR009057 -
Lal2g1871 545 ProSiteProfiles 'Homeobox' domain profile. 345 408 IPR001356 GO:0003677
Lal2g1871 545 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 19 460 - -
Lal2g1871 545 SMART HOX_1 348 412 IPR001356 GO:0003677
Lal2g1871 545 Pfam Associated with HOX 180 308 IPR006563 -
Lal2g1871 545 Pfam Homeobox KN domain 365 404 IPR008422 GO:0003677|GO:0006355
Lal2g1871 545 SMART prehox3 175 309 IPR006563 -
Lal2g1871 545 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 19 460 - -
Lal2g1871 545 Gene3D - 351 413 - -
Lal2g1871 545 CDD homeodomain 348 409 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1871 Lal-Chr2 20982192 20987284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1871 126 545 Homeobox Transcription Factor Family AT5G02030 50.617 2.47e-117 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal2g1871 POX 5.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1871 - - vun:114185080 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1871 2 20982192 20987284 Lal2g1871 2 20982192 20987284 ECH
Lal2g1871 2 20982192 20987284 Lal9g1621 9 18562560 18568567 LSH