Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1856 ATGCAGTTCAATACCCAAAACAACAATGATGGTCATGGACAAGTTATTAAATCTTATAGTTGTTCCTTTTGCAAGAGAGGATTCACAAATGCACAAGCATTAGGGGGTCACATGAATACTCATAGAAGAGATAGAGCTAGGCTCAAACAATCTTATGAAGAAAACATGATTTCTTTGGACATGTCAATCAAAAACACCAATAATGATCATGATGATCATGCTCCTCAAAAGGGCAAGGTGGCTGGTTCTGAAAACCTTCCACAATATATTCCTTCTTTTGTTGATAGTGTTGTGGTGCAAATGATTGAAGACAAGAAAGGTTATTTGGACCTTGAGCTTAAGTTAGGGTCTGATATGGAGGAGGAACAAACTTTGAGCACCAGAAAAAATTACAAAAAGCCATTCACTTTTTCGGATAAAGATAATGATCTTGGATATCTAAGAGGCAAGAGGATTGAAGGGAAGAAAGTAGAATTAGACCTTGAGCTAAGGTTGGGTACTGAGCCACAAGAGACAGCACCAACTTTGAGTACAATAGAGTTCTTCTGA 549 0.377 MQFNTQNNNDGHGQVIKSYSCSFCKRGFTNAQALGGHMNTHRRDRARLKQSYEENMISLDMSIKNTNNDHDDHAPQKGKVAGSENLPQYIPSFVDSVVVQMIEDKKGYLDLELKLGSDMEEEQTLSTRKNYKKPFTFSDKDNDLGYLRGKRIEGKKVELDLELRLGTEPQETAPTLSTIEFF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1856 182 PANTHER OS07G0101800 PROTEIN 9 127 - -
Lal2g1856 182 Pfam C2H2-type zinc finger 19 43 - -
Lal2g1856 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Lal2g1856 182 SUPERFAMILY beta-beta-alpha zinc fingers 17 45 IPR036236 -
Lal2g1856 182 Gene3D Classic Zinc Finger 2 77 - -
Lal2g1856 182 PANTHER TRANSCRIPTIONAL REGULATOR TAC1 9 127 - -
Lal2g1856 182 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1856 Lal-Chr2 20870284 20871954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1856 17 55 C2H2 Transcription Factor Family AT3G09290 71.795 9.28e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal2g1856 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1856 - - ccaj:109793777 125.176