Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1851 ATGATGTTGAATGGAACTAGTGTTTGTGATGATGATGATGATAATATGTTGTATGAACAACTATGGAAGACATGTGCAGGACCTCATGTTGATGTTCCTCATGTTGGTCAAAGGGTCTTTTATTTTCCTCAAGGACACATGGAACAATTAGAAGCATCAACAAATCAGGAACTAAATCAGAGGATTCCATTGTTCAAACTTCACACCAAGATCCTCTGCCGAGTCATTAATGTCAATTTATTGGCTGAACCAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTGCCAGAATCTAGTCAAGCTGAGCCTACAAGCCCTGATCCATGCCCTGCTGAGCATCCAAGGCCAACAGTTCACTCCTTTTCCAAGGTCTTAACTGCCTCTGATACCAGCACCCATGGTGGCTTCTCTGTCCTCAGGAAACACGCCACCGAATGCCTTCCGGCTATGGACATGTCCCAATCAACCCCTACTCAGGAGTTGGTTGCCAGGGATCTTCATGGTTACGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCTCGCCGACACTTGCTCACAACCGGATGGAGTACTTTCGTGACTTCTAAGAGATTAGTTGCTGGAGATACCTTTGTATTTCTCAGAGCGGACAACGGAGAATTGCGTGTTGGAGTGAGGCGCCTTGTTCCTCAGCAGAACAGCATGCCATCATCAGTGATTTCCAGTCAGAGCATGCACTTAGGCGTTCTTGCAACTGCATCTCATGCTGTTGCAACTCAGACTCTTTTCTTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAAGCGTGAACAAGTATTTGGAGGCTGTCAATCATAAATTTGATGTTGGTTTGAGGTTCAAGATGAGGTTTGAAGGAGATGATTCTCCCGATTCGGACAAAAGATTTTCAGGCACAATAGTTGGAGTAGAAGATATTTCTCCTCATTGGATAAATTCAAAATGGCGATCGCTTAAGGTTCAATGGGATGAACCGGCATCTGTTCCAAGACCAGATAGGATTTCACCTTGGGAGATTGACCCTCTTCTGACTGCGCCTTCATTTCAACCAGCTGTTGTAAAGAGTAAAAGGCCTCGACCACCCAGTGAAATTCCAGATTTTGACACAACAACAGCTTTTTGGGATGCTGGGATGACACCGTCCGATTTAACACAACTAAATGTTACGGCTGAAAGCAAAAGGAGTGACAATGACCAAATGTGGCATCATAAGCAGATTGATAATTGTAAAAGCAGCTGCAATGCTATATCAAGGAATCAGGCAGAAGGAATTTGGCTATCTTCTCCTCATTCCAGTGTTCCTTCTCATTTGTTTCAGGACACGACCGATGATAGCAAGAGTTTATCAGCTTGGCTTAATTCAAAGACTCATTCAGAAAAACTGAACAATGAAAATTTGCTTGACCAAGTTGATAAGGAGAACAAAGTAGAGGGTGCTACAAGCTGTAGATTGTTTGGAATTGAGCTTATTGATCATGCTAGGAACTCTCCTGCTATAGAGAAAGCATGTGTACATTCTGAAAATATATCCGGAGTCACGAATGAGGGCTGTGTTAGAACCTTGTCCAAAACTGATGCAGACCATAATTCCGATCTCTCGAATGCATCTAAAGAGAGGAAACAGGAACAGATGCAAGCATCTCCTAAAGAGACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGATCGCAGTGGGTCGTGCCGTGGACTTGACCATGTTGGATGGGTATGATCAACTTATAGATGAATTGGAGAAGATGTTTGACATAAAGGGCCAGCTTCAACTCAGGAATAAGTTGGAAATTGTCTTCACCGATGACGAAGGCGATATTATGCTTGTTGGTGATGATCCGTGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATCTGTTCCAGCCAGGATGTGAAGAAAATGAGCTCAGGGAACAAATTGCCTCTCGCTTCTTCAATAGAAGATGAAATTGTATTAAGCTCAGACACAGCTGAGAATTGA 2046 0.4306 MMLNGTSVCDDDDDNMLYEQLWKTCAGPHVDVPHVGQRVFYFPQGHMEQLEASTNQELNQRIPLFKLHTKILCRVINVNLLAEPETDEVYAQITLVPESSQAEPTSPDPCPAEHPRPTVHSFSKVLTASDTSTHGGFSVLRKHATECLPAMDMSQSTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRADNGELRVGVRRLVPQQNSMPSSVISSQSMHLGVLATASHAVATQTLFLVYYKPRTSQFIISVNKYLEAVNHKFDVGLRFKMRFEGDDSPDSDKRFSGTIVGVEDISPHWINSKWRSLKVQWDEPASVPRPDRISPWEIDPLLTAPSFQPAVVKSKRPRPPSEIPDFDTTTAFWDAGMTPSDLTQLNVTAESKRSDNDQMWHHKQIDNCKSSCNAISRNQAEGIWLSSPHSSVPSHLFQDTTDDSKSLSAWLNSKTHSEKLNNENLLDQVDKENKVEGATSCRLFGIELIDHARNSPAIEKACVHSENISGVTNEGCVRTLSKTDADHNSDLSNASKERKQEQMQASPKETQSKQICSRSCTKVQMQGIAVGRAVDLTMLDGYDQLIDELEKMFDIKGQLQLRNKLEIVFTDDEGDIMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSGNKLPLASSIEDEIVLSSDTAEN 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1851 681 SUPERFAMILY CAD & PB1 domains 572 645 - -
Lal2g1851 681 PANTHER AUXIN RESPONSE FACTOR 12 669 - -
Lal2g1851 681 Gene3D - 565 657 - -
Lal2g1851 681 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Lal2g1851 681 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Lal2g1851 681 MobiDBLite consensus disorder prediction 533 564 - -
Lal2g1851 681 SMART B3_2 122 224 IPR003340 GO:0003677
Lal2g1851 681 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal2g1851 681 Pfam AUX/IAA family 547 653 IPR033389 -
Lal2g1851 681 SUPERFAMILY DNA-binding pseudobarrel domain 113 251 IPR015300 -
Lal2g1851 681 Gene3D - 119 224 IPR015300 -
Lal2g1851 681 ProSiteProfiles PB1 domain profile. 569 650 IPR000270 GO:0005515
Lal2g1851 681 MobiDBLite consensus disorder prediction 533 555 - -
Lal2g1851 681 Pfam Auxin response factor 248 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal2g1851 681 Gene3D - 283 356 - -
Lal2g1851 681 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1851 Lal-Chr2 20841307 20845546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1851 17 662 B3 DNA Binding Superfamily AT4G23980 58.079 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal2g1851 AUX_IAA 1.9e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1851 K14486 - gmx:100779003 1047.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1851 2 20841307 20845546 Lal1g2188 1 23927831 23932048 LSH