Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1807 ATGGAGTTAGAAGGGGTTTATCTGCATGCAAGTACTATAGAGAATATTAGTAATCACCACTTTGTTGCTGGTTTTGAAGAAACTTTGGGTGCTTCTGAGAGAGAGATGTGGCTGAACAATGATGATCAAGATGATGATCTTCTTGGTGTGAATGATCCTTCCATGTTCTATGCAGATTTCCCTTCTCTCCCTGATTTCCCATGCATGTCTTCATCTTCCTCTTCTTCACCAACTCATGTACTTCCTCTTAAGACCACAACTTGCACCACCACAACCACCTCATCGTCTTCGTCGACTTCGGCGGCTTCTAGGTCTTTTCTGAAGTCAGGGCAGCCTAGTGTACGAGACTCTCATCATCAATTAATGGGATCTGGGGAGGCTGTTTTGAAGTCTGATTTTGAGGAAAAATTTGAGCAAAACAACTACAACTGTTACATCCAACATCAGAATCATCAGCAGCAGCATGATTTCGATGATATAGGAACTGCAACTTTGTCCTCAACTGCATCCATGGAGGTATCTCAACAGCACCATTACCAGGAACACCAAAACCATGATCCTGGTCTTGATGGTACTAGTGTTGGAGATTGCATGGATGAAGTGATGGGTTTTGGGTACATGGAGCTTTTTGAGGGGAATGAATTTTTTGATGCAGCATCTATTCTCCAGAGTGAAGAAAACCCTTTAGGGTTATTCACACAGGATCAGATGGTGCCAGTGCCACAGCAAGAGGAGCATCAACATCAACATCAACTTCAACATGCTATGGTACCACAACATCATCATAATCATCATTATCAAGAACCTACACCTCTACAACATCAAGGTATGATAAATGAAGAAGAGAATCGTCATAATCAGGCTCTATTGTGTCCCCCTACTACCACTAATGATAATGAAGAGGTGATTCAAGGAGAAGGTGGTGCAACTGGTGCTGGTTTAGATGATGAAATGAGCAATGTTTTCTTGGAGTGGCTCAAGTCTAACAAGGATAGTGTTTCTGCTAATGATTTGAGGAGTGTGAAGCTGAAAAAAGCAACAATAGAAAGCGCTGCAAGGCGTTTAGGTGGAGGTAAAGAAGCCATGAAGCAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGCCATCTTCAGAATAAAAGGCCAAAGGAGAGTAATAATAATTCAGATCCACTAACGCATTTTCAGGGTCCTATTCAAAGCCAAAACAGAAACAACACTAGTTCCAATCTGAAGAATGCACCTGATCAATCAAACACTTGTTTCAACCAAACACCTTGGGTATCTGTGTCTGAACCAAATTATGGAACAACAACAGATCAAGCTCCTCTTATGGCAACTCCTAAACCATTTCCACAACAAATGGTTGGTGCTGCTTCAAATAATCATAACCCTTATCAACCTGGTGCTGAATTTCAAATGCTGGATTCAACACCTTCATGGCCTCCTTCTCAGTTCACTACTGTTGCTAATTTTCAATATAATCAGTCATTTGGGGACAACAATCTTCACACTCAAAAGCCGTCTGCGGTAACTGCAACTGATGGCTATGGGAATCAATACCCTTATCTGTATTTTCACCATAGCCCTGGTGGTGATAGGTTGATGAGATTAGGCCCCTCGGCGACCAGAGAAGCAAGGAAGAAGAGGATGGCAAGGCAGAGAAGGATTTTGTCTCATCACAAGCACGGTCACAACGAGAACAATCGACTCTTGGATTCACATGCAAGATTGGGAAGTGATAATTGCACTGCTATGTTGGCTCCTGCTCATGCAAATCAAGCCAATTGGATGTATTGGCAGACTATGTCGGGTGGGGCTGCTCCTATGGCACAGGTGGTTCCTGCAGAGCCACCAGCAGCCCAACAGGTGGTGGATTGGACAGCCATGCAAACCCAGAATACACAGAATTATCACGAAGGTCGGGTCTCATCGGAAAAGCGACAACAGGGTTGGAAGTCTGAGAAGAACTTGAAGTTTCTTCTACAAAAGGTGTTAAAGCAAAGCGATGTCGGAAGTTTGGGGAGAATTGTTTTGCCGAAAAAAGAAGCAGAAACCCACTTGCCAGGACTTGAGGCAAGAGATGGAATTTCCATAACAATGGAAGATATCAGTACTTCTCGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTTGAGAACACTGGGGACTTTGTGAGAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCAGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTGAAAGTGAGGCAACAAGGGACAAAACCAGAGACCAAGAAAGCATTAAAGTCTCAGAAAAACCAACATGGATGTAATGCTGCAACTATAGCTGGTGCTGTGATTAATAATAATAATGTTACACCATCTTCACCTAAGCAGAAAAATGAAAAGCTAGTTAAATAA 2448 0.4236 MELEGVYLHASTIENISNHHFVAGFEETLGASEREMWLNNDDQDDDLLGVNDPSMFYADFPSLPDFPCMSSSSSSSPTHVLPLKTTTCTTTTTSSSSSTSAASRSFLKSGQPSVRDSHHQLMGSGEAVLKSDFEEKFEQNNYNCYIQHQNHQQQHDFDDIGTATLSSTASMEVSQQHHYQEHQNHDPGLDGTSVGDCMDEVMGFGYMELFEGNEFFDAASILQSEENPLGLFTQDQMVPVPQQEEHQHQHQLQHAMVPQHHHNHHYQEPTPLQHQGMINEEENRHNQALLCPPTTTNDNEEVIQGEGGATGAGLDDEMSNVFLEWLKSNKDSVSANDLRSVKLKKATIESAARRLGGGKEAMKQLLKLILEWVQTSHLQNKRPKESNNNSDPLTHFQGPIQSQNRNNTSSNLKNAPDQSNTCFNQTPWVSVSEPNYGTTTDQAPLMATPKPFPQQMVGAASNNHNPYQPGAEFQMLDSTPSWPPSQFTTVANFQYNQSFGDNNLHTQKPSAVTATDGYGNQYPYLYFHHSPGGDRLMRLGPSATREARKKRMARQRRILSHHKHGHNENNRLLDSHARLGSDNCTAMLAPAHANQANWMYWQTMSGGAAPMAQVVPAEPPAAQQVVDWTAMQTQNTQNYHEGRVSSEKRQQGWKSEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPGLEARDGISITMEDISTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQGTKPETKKALKSQKNQHGCNAATIAGAVINNNNVTPSSPKQKNEKLVK 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1807 815 Pfam B3 DNA binding domain 664 760 IPR003340 GO:0003677
Lal2g1807 815 SUPERFAMILY DNA-binding pseudobarrel domain 662 758 IPR015300 -
Lal2g1807 815 ProSiteProfiles B3 DNA-binding domain profile. 663 765 IPR003340 GO:0003677
Lal2g1807 815 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 808 - -
Lal2g1807 815 CDD BfiI_C_EcoRII_N_B3 661 762 - -
Lal2g1807 815 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 808 IPR044800 GO:0003700
Lal2g1807 815 SMART B3_2 663 763 IPR003340 GO:0003677
Lal2g1807 815 MobiDBLite consensus disorder prediction 378 424 - -
Lal2g1807 815 MobiDBLite consensus disorder prediction 88 118 - -
Lal2g1807 815 Gene3D - 659 780 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1807 Lal-Chr2 20296826 20301128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1807 34 812 B3 DNA Binding Superfamily AT3G24650 41.071 2.71e-144 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal2g1807 B3 1.3e-18 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1807 2 20296826 20301128 Lal1g2174 1 23749624 23753399 LSH