Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1800 ATGGTGAAGGTTCACTTTCCCCAATGCTTCATCACTCTCATCATTCTCCTTATGCCACTGCTTTTAACTACTGCCAACACGTTCAATCACTATCAGAATAAAAAACTACCAAGGGATGATGATATTATCGGAGAAGCGAACTTGAAGAATTCATCAATGGCGGAAACGGAAAGGTCAGGTGATGATGCTTTGAATGAGCATGCAGTTGATAATCCAGATGAGATAGTTTCTATGGTTGACATGAGAATCCGGAACTATACAGAGAGAAGGAATCTTAATTTTTTCTCATGTGGGAGTGGGAATCCTATTGATGATTGTTGGCGCTGTGACAAGCTTTGGCACCGTAACAGAAAACGCTTAGCCGATTGTGCCATTGGTTTTGGACGCAACGCCATTGGTGGTCGTGACGGACGCTACTACGTTGTCACTGACCCAACTGACAATGATGCTGTCAACCCTAAACCAGGTACCCTCCGCCACGCTGTGATTCAAGACAGGCCCTTATGGATAGTGTTCAAAAGGGACATGGTGATCACATTAAAGCAAGAACTCATAATGAACAGTTTCAAGACCATTGATGGTCGTGGTTTTAACGTTCACATTGCTCATGGAGCTTGTATTACAATCCAATACATCACAAATATCATCATTCATGGACTCAATATTCATGATTGCATTCAAACTGGGAATGCTATGGTTCGTAGTTCTCCTTCACATTTTGGATGGAGGACCATGGCTGATGGTGATGGAATCTCTATCTTTGGTGCCAGCCATATTTGGATTGATCATAACTCTCTCTCTAATTGCTCCGATGGACTTATTGATGCTATTATTGGCTCTACTGCCATCACCATATCCAACAATTTCTTCACTCGCCACAACGAGGTTATGCTATTGGGTCATAGTGATTCTTATGTTCGAGACAAGCATATGCAAGTGACCATTGCATACAACCATTTTGGGGAGGGTCTTGTTCAAAGAATGCCAAGGTGCAGACATGGATATTTCCATGTGGTAAACAATGATTATACCCATTGGGAAATGTATGCAATTGGTGGCAGTGCTAATCCCACAATTAACAGCCAAGGCAACCGATATCTTGCCCCTCTCAACTCCCATGCTAAGGAGGTGACAAAGAGGGTAGAAACAGGGGAAGATGCAGGGGAAGATACATGGAAAAACTGGAATTGGAGATCTGATGGAGACCTATTACTGAATGGAGCATATTTTACTTCATCAGGAGCAGGATCTGCAGAAAGTTATGCTAGAGCCTCAAGTTTGTCTGCAAAATCTTCTTCAGTGGTTGGTACCCTTACTTCTGGTGCTGGTGTTCTTAACTGCCGTAGAGGTATCATGTGTTAA 1362 0.428 MVKVHFPQCFITLIILLMPLLLTTANTFNHYQNKKLPRDDDIIGEANLKNSSMAETERSGDDALNEHAVDNPDEIVSMVDMRIRNYTERRNLNFFSCGSGNPIDDCWRCDKLWHRNRKRLADCAIGFGRNAIGGRDGRYYVVTDPTDNDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGFNVHIAHGACITIQYITNIIIHGLNIHDCIQTGNAMVRSSPSHFGWRTMADGDGISIFGASHIWIDHNSLSNCSDGLIDAIIGSTAITISNNFFTRHNEVMLLGHSDSYVRDKHMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPLNSHAKEVTKRVETGEDAGEDTWKNWNWRSDGDLLLNGAYFTSSGAGSAESYARASSLSAKSSSVVGTLTSGAGVLNCRRGIMC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1800 453 SMART amb_all 175 372 IPR002022 -
Lal2g1800 453 Pfam Pectate lyase 185 364 IPR002022 -
Lal2g1800 453 PANTHER PECTATE LYASE 18-RELATED 22 450 IPR045032 GO:0030570
Lal2g1800 453 Gene3D - 100 446 IPR012334 -
Lal2g1800 453 SUPERFAMILY Pectin lyase-like 78 448 IPR011050 -
Lal2g1800 453 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Lal2g1800 453 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Lal2g1800 453 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Lal2g1800 453 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Lal2g1800 453 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Lal2g1800 453 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Lal2g1800 453 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Lal2g1800 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Lal2g1800 453 PANTHER PECTATE LYASE 22 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1800 Lal-Chr2 20237452 20246325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1800 47 453 Polysaccharide Lyase AT4G13710 76.456 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1800 K01728 - gmx:100809277 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1800 2 20237452 20246325 Lal9g1573 9 18071330 18077827 LSH