Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1784 ATGGCTGATGATTTATATGAATGGGATGCTGACAAAATGCTTGATGTTTATATTCTTGATTATCTTGTGAAAAATAACTTACAAACCTCAGCAAATATTTTCAAGACAGAAAGCAACCTTCCGGATCGTACACCGCCAATAAAGAATGCACCACTAGGATTTCTTTATGAGTGGTGGTTTGTCTATTGGGACATTTACCTCGCGAAGCGATTTAATCAACATTGCTCTACCTCTGCTTCAGCTTACATTGAGACCCTGCGAAAGAAGGCAAGAGAAGGTCAACTTCAAATGCAGCAATTGCAAGAAACTCCGAATCACAACGAACAGTTGCGACAAAGAGATAGTAATCTTTCTGTACTTGGTGGTTCCTTAAATGCCATGAACTCTAGAGGAATGATGAGGCCGCCAGCAGCAAGCTTGTCAGTCGTGAAAATGTTTGAAGATGGAATGAGACACTCTAATTTAATGAGTTCAAAGGCACCTTTAACTCCTATGGATGCCTATAGGATGGCCTTACCTAAAGGCCACCTGGTTCGTGATCATTCAGGAAATGCGTCTACCACATTACAGCAGGGCGTCGAACGGGAAGTTAACTTGGGAGGCACTCCAATGAGTTTTCCTATGGATCAATCAGGTTTTCAACAAACAATGTTACAATCGGATTCTGTGGTAGGCGATGCAGGACCATATCAAGGAAATACAAGTCTTCTGCCGAAGGGCTTGCCTCGCGCTGGAATTGATCAACTAACACCTACTTTAGGTGTACAGTCTCAGATGCCTAATTTGCCAAATAAAAACCAAATTCTGGAGTCAGAATGGCAGCGCGTCACGGCACAGGCTCAGGCAATACTGAGTTCAAAGTATGCTAAGTCTGACAGGACCCGATTGCAGTCAGGTTCACCCGAGGTGAGTATGACCCGGGCGCAACATTCGTTTTCTCAACAGCAGGACATGAATGATAGAAAAAGAAAACAGTCTATTTTTCCTGGTGCTGCCAATATGAATGCTACTTTTGCTGGTGGGAACAGAGTTAGTCCTTCACCTAACTCAACACCATTACTGGTCATACCTGATGACGGAATAAACACCGAAAGCAGCATGCAGTATGTTAGCAATGTGCAAAAAAACATGATGATGGATGGTACAAATTTACTGGAGAACGTGGAACGGTTCGAAGAGATTGGTACTTCAGGTGATAACATGGACTTCTTTCAATCAATCGACGCAGAAGGTTTCTCCTTTGCTGAACTTCATTGCATAAGAACAAGCAACAGCAAAATTACTTGCTGTGACTTTTCTTCAGATGGAAAGCTTCTTGCCAGTGCTGGACATGACAAGAAGGTTTTCATATGGAATATGGACGCTTTGCATACCGATAGCACTCCTGGGAATCACAAATCAGTCATTACAGATGTCCGTTTCAGACCAAACTCTTCCGGGTTTGCGACATCCTCTTTCGATAATTGCGTGCGGTTATGGGATGCAGCTAATCCAAAATATTGTGTGGAAGAATTTAGTGTGCACAATTCAGCTGTTATGTCACTCGACTTCCACCCTATGAAAACTGATATTCTCTGTGTCTCTGACATTGAAAGTGAAATTCAGTACTGGGACATTACTACATTCACCTTTGTCCATGCCTTTAAGGGTGGTAATGCAAAAGTGAGGTTTCAGCCTAGAGTAGGACAGGTACTGGCATCGGCTTATGATAACGGAGTATCGATTTTTGACGTCGAGACTAGCATGCAAATTTACTCACTCCAGGGTCATCCTGAAGCTGTAAGCTATATCTGTTGGGATGCAAATGGAGGAACCTTGGCATCTATGAGTCCTAATTTGGTGAAGATTTGGTCACTGGTATCAGGAGAATGTGTTAAAGAGTACCACAGCTCCTTTCAGAACCAGTTTCATTCCTGTGCTTTTCATCCAATAAATTCAACTATGTTGGTCATAGGAGGGAACACATCCTTAGAACTTTGGGACATGGCTGTGAACAAAAACATGACATTTCATGCACATGAGGATGTAGTATCTGCTTTGGTTCATTCTCCTCTCACTGGAATGGTTGCTTCTGCAAGTTATGATGGCTTTGTGAAGTTGTGGAAATAA 2109 0.4253 MADDLYEWDADKMLDVYILDYLVKNNLQTSANIFKTESNLPDRTPPIKNAPLGFLYEWWFVYWDIYLAKRFNQHCSTSASAYIETLRKKAREGQLQMQQLQETPNHNEQLRQRDSNLSVLGGSLNAMNSRGMMRPPAASLSVVKMFEDGMRHSNLMSSKAPLTPMDAYRMALPKGHLVRDHSGNASTTLQQGVEREVNLGGTPMSFPMDQSGFQQTMLQSDSVVGDAGPYQGNTSLLPKGLPRAGIDQLTPTLGVQSQMPNLPNKNQILESEWQRVTAQAQAILSSKYAKSDRTRLQSGSPEVSMTRAQHSFSQQQDMNDRKRKQSIFPGAANMNATFAGGNRVSPSPNSTPLLVIPDDGINTESSMQYVSNVQKNMMMDGTNLLENVERFEEIGTSGDNMDFFQSIDAEGFSFAELHCIRTSNSKITCCDFSSDGKLLASAGHDKKVFIWNMDALHTDSTPGNHKSVITDVRFRPNSSGFATSSFDNCVRLWDAANPKYCVEEFSVHNSAVMSLDFHPMKTDILCVSDIESEIQYWDITTFTFVHAFKGGNAKVRFQPRVGQVLASAYDNGVSIFDVETSMQIYSLQGHPEAVSYICWDANGGTLASMSPNLVKIWSLVSGECVKEYHSSFQNQFHSCAFHPINSTMLVIGGNTSLELWDMAVNKNMTFHAHEDVVSALVHSPLTGMVASASYDGFVKLWK 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1784 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 454 - -
Lal2g1784 702 Pfam LisH 12 38 IPR006594 GO:0005515
Lal2g1784 702 Pfam WD domain, G-beta repeat 418 452 IPR001680 GO:0005515
Lal2g1784 702 Pfam WD domain, G-beta repeat 668 702 IPR001680 GO:0005515
Lal2g1784 702 Pfam WD domain, G-beta repeat 463 494 IPR001680 GO:0005515
Lal2g1784 702 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 7 702 IPR044716 GO:0003714
Lal2g1784 702 ProSitePatterns Trp-Asp (WD) repeats signature. 439 453 IPR019775 -
Lal2g1784 702 SMART WD40_4 541 577 IPR001680 GO:0005515
Lal2g1784 702 SMART WD40_4 663 702 IPR001680 GO:0005515
Lal2g1784 702 SMART WD40_4 455 494 IPR001680 GO:0005515
Lal2g1784 702 SMART WD40_4 621 661 IPR001680 GO:0005515
Lal2g1784 702 SMART WD40_4 580 618 IPR001680 GO:0005515
Lal2g1784 702 SMART WD40_4 413 452 IPR001680 GO:0005515
Lal2g1784 702 SMART WD40_4 498 538 IPR001680 GO:0005515
Lal2g1784 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 670 702 - -
Lal2g1784 702 Gene3D - 258 555 IPR015943 GO:0005515
Lal2g1784 702 SUPERFAMILY WD40 repeat-like 412 702 IPR036322 GO:0005515
Lal2g1784 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 702 IPR001680 GO:0005515
Lal2g1784 702 MobiDBLite consensus disorder prediction 291 315 - -
Lal2g1784 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 462 494 IPR001680 GO:0005515
Lal2g1784 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 461 IPR001680 GO:0005515
Lal2g1784 702 Coils Coil 83 103 - -
Lal2g1784 702 CDD WD40 416 702 - -
Lal2g1784 702 ProSiteProfiles LIS1 homology (LisH) motif profile. 10 42 IPR006594 GO:0005515
Lal2g1784 702 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 7 702 - -
Lal2g1784 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 462 494 - -
Lal2g1784 702 MobiDBLite consensus disorder prediction 291 321 - -
Lal2g1784 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 547 IPR001680 GO:0005515
Lal2g1784 702 Gene3D - 556 702 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1784 Lal-Chr2 20102080 20107220 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1784 500 701 Miscellaneous Gene Families AT5G08390 24.402 3.60e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal2g1784 WD40 0.047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1784 - - lang:109352545 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1784 2 20102080 20107220 Lal1g2157 1 23637090 23642242 LSH