Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1783 ATGGCTAAGGATCAAGAAATTTCAGAATCTGATAAAATGCTTGACATCTTCATTTATCATTACCTTGTGAAATGTAAATTACATGCCACAGCAGAAGCTTTTAGGAAAGAAAACAATATTTCCACTGATCAAACAAAAATTGATGACCCTTCAGATTTTCTTCTTGGGTGGTGGACTGTGTTTTGGGACTTGACCAAGGCAAAAACAAATAATAAACCTTCTGAGTCTGCCTTAGCCTACATTAAGGAGAACATGGAACAGTTTGGAGATGATGGTATTTTAGATTATGACTTTGAATCATTTCTATTAGGAAACACAGAAGATGTTGGTAATCTCAATGATACAATAAAACAAAGTCAGAATGCTGAGCAACAAAAAGAGAATCCAGAAGATTTCACCTTTTCTGAATTTGCTTGTGCAAGAACAAGCAACACCAAAGTTACTTGCTGCCACTTTTCTTCAGATGGAAAGTTTCTTGCCAGTGCTGGTCATGACAAGAAGGTTGTTCTCTGGAACATGGACACTCTGCAGACAGAAAGCATGCCTGCAGAACACAAATCGACCATTTTAGATGTCCGATTTAGACCGAATTCATCTCAGCTGGCGACTGCCTCTATGGATAAATCCGTGCGGATATGGGATGCAGCCAATCCAAACCATTGTATGCAGGAGTATACTGGGCACAATTCAGCTGTTATGTCGGTCGATTTCCACCCGAATAAGACTGATCTATTATGCTTCTCTGATAGTAAAAATGAAATTCGGTTTTGGAATATGACTGCATCCTCCTTCACCGGTGCACTAAAGGGGGGTAATGCACAAGTGAGGTTTCAGCCCGGTGTTGGAGAGTTACTAGCCGCAGCTTATGATAAAGGAGTTTCGATTTTTAATGTCGAAACTGGCACACAAATTTACTCCCTCCAGGGTCATCCTGAAGTGGTGAACTATATTTGCTGGGGCGCAAATGGCGATGTCTTGGCATCGGTGAGTCGTAATTTCGTCAAGTTTTGGTCATTGTCCTCAGGAAAATGCACTAAAGGGCTTAGCTCAAGTGGAGAGCAATATCATTCTTGTGTTTTTCATCCAACTCATTCAAATTTATTGGTGATTGGAGGAACTTCTTGCTTTGAGCTGTGGGACATAGCTGAGGACAAGAACATGAATGTTTCTGCAGACCAGAATGTAATATCTTGTTTGGTTCAGTCTCCTGTCACTGGAATTGTTGCATCTTCAAGTCATGACTGCACTGTAAAGTTGTGGAAATAA 1266 0.4052 MAKDQEISESDKMLDIFIYHYLVKCKLHATAEAFRKENNISTDQTKIDDPSDFLLGWWTVFWDLTKAKTNNKPSESALAYIKENMEQFGDDGILDYDFESFLLGNTEDVGNLNDTIKQSQNAEQQKENPEDFTFSEFACARTSNTKVTCCHFSSDGKFLASAGHDKKVVLWNMDTLQTESMPAEHKSTILDVRFRPNSSQLATASMDKSVRIWDAANPNHCMQEYTGHNSAVMSVDFHPNKTDLLCFSDSKNEIRFWNMTASSFTGALKGGNAQVRFQPGVGELLAAAYDKGVSIFNVETGTQIYSLQGHPEVVNYICWGANGDVLASVSRNFVKFWSLSSGKCTKGLSSSGEQYHSCVFHPTHSNLLVIGGTSCFELWDIAEDKNMNVSADQNVISCLVQSPVTGIVASSSHDCTVKLWK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1783 421 Gene3D - 63 278 IPR015943 GO:0005515
Lal2g1783 421 PRINTS G protein beta WD-40 repeat signature 159 173 IPR020472 -
Lal2g1783 421 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Lal2g1783 421 PRINTS G protein beta WD-40 repeat signature 408 421 IPR020472 -
Lal2g1783 421 ProSitePatterns Trp-Asp (WD) repeats signature. 159 173 IPR019775 -
Lal2g1783 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 421 IPR001680 GO:0005515
Lal2g1783 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 214 - -
Lal2g1783 421 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 8 82 IPR044716 GO:0003714
Lal2g1783 421 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 83 421 IPR044716 GO:0003714
Lal2g1783 421 Pfam LisH 12 37 IPR006594 GO:0005515
Lal2g1783 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 175 - -
Lal2g1783 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 214 IPR001680 GO:0005515
Lal2g1783 421 ProSiteProfiles LIS1 homology (LisH) motif profile. 10 42 IPR006594 GO:0005515
Lal2g1783 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 421 - -
Lal2g1783 421 SUPERFAMILY WD40 repeat-like 141 421 IPR036322 GO:0005515
Lal2g1783 421 SMART Lish 10 42 IPR006594 GO:0005515
Lal2g1783 421 Gene3D - 279 421 IPR015943 GO:0005515
Lal2g1783 421 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 83 421 - -
Lal2g1783 421 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 8 82 - -
Lal2g1783 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 181 IPR001680 GO:0005515
Lal2g1783 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 259 - -
Lal2g1783 421 SMART WD40_4 261 297 IPR001680 GO:0005515
Lal2g1783 421 SMART WD40_4 300 338 IPR001680 GO:0005515
Lal2g1783 421 SMART WD40_4 175 214 IPR001680 GO:0005515
Lal2g1783 421 SMART WD40_4 133 172 IPR001680 GO:0005515
Lal2g1783 421 SMART WD40_4 341 380 IPR001680 GO:0005515
Lal2g1783 421 SMART WD40_4 218 258 IPR001680 GO:0005515
Lal2g1783 421 SMART WD40_4 382 421 IPR001680 GO:0005515
Lal2g1783 421 Pfam WD domain, G-beta repeat 220 258 IPR001680 GO:0005515
Lal2g1783 421 Pfam WD domain, G-beta repeat 184 214 IPR001680 GO:0005515
Lal2g1783 421 Pfam WD domain, G-beta repeat 401 421 IPR001680 GO:0005515
Lal2g1783 421 Pfam WD domain, G-beta repeat 145 172 IPR001680 GO:0005515
Lal2g1783 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 267 IPR001680 GO:0005515
Lal2g1783 421 CDD WD40 146 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1783 Lal-Chr2 20093734 20097620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1783 195 381 Miscellaneous Gene Families AT5G08390 27.461 1.14e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal2g1783 WD40 0.0005 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1783 - - lang:109352977 569.696