Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1680 ATGGGTTCTGTAAGTAACTCAAATCCATTTGCACCAAACACTGTTTTCAAAGATTGTTCTCAAGGAATTTGCAGCATATATTGTCCTCAATGGTGTTACATAATTTTCTCACCACCTCCTCCAATAACAACACTTGGTAGTGGTGATGATGACTTAGATAATTACTCTTCAAGTTTTCATTTTTCTCCTCTTATAGTTGCTGTTATTGGAATCTTAACAAGTACTTTTATCTTGGTTACTTACTATACCATCATTTCAAGGTTCTGCAAGAACAGAATCAATGACCCTATAAACTCTCAAATGGAACATAATCATGAAGATGGTATGAACAATGAGTTGGTTCAAGTTTCTTCTTCAGCTTCTGGCCTTGATGAGACTCTCATCAAATCGATAACAGTTTGTAAGTACAAGAAAAATAGTGTTTTGGTTGATGGTAGTGATTGCTCTGTTTGTTTGAGTGAGTTTGTAGAGAATGAGAGTTTAAGATTATTGCCTACGTGTAACCATGCTTTTCATCTTCCTTGTATTGATCCTTGGTTGAAATCACACTCGAGTTGTCCTTTGTGTCGGTCGAATATCGATCCGAATCAAAGAGATTGTAGTTCAGTATTGATGGAAGTTCCAACTAGCATGAACATGAGTATCAATGCATTGGAATACCAGCATAGGAGTGATGATGTTGTTATAGTTATTCAGAGTTCTGAGACAAGTTCGCAGCAAGACGATTCGGTTAGTTTCGCCGATGAAGTTCTTCCAAAGTGGCCAGGAGAAGGTGATGCTGCTAATAATGATGAAGAGAATAATATTGATCAGTTAAATTTGAGTAATGTAAGAAGGGTTTCGGTACGCGATATACTGAATGATAACGAACATGATATGGAGTTTCCGAGGGAGGGATCGGATACTGGATCATCAAGAGGAGCTTCTGAAGGAGAGAAAAGTGAAGAGAATGGTAAAAGAGAAGTGATGAATATGGATACTACCCGTGTTTTAAATTACGGTTGTGGTCGCGATTGCGGCAACGATTGCAGCAACTGTGATTGCGGTCATTGCGATGTGGATTGCAGTCGTTGCGGTGTGAATTATTTTGTTATTAAAACAACAATGGTTGCATTGCGGCCTGATGCGGACGCATCATTGTGA 1143 0.3858 MGSVSNSNPFAPNTVFKDCSQGICSIYCPQWCYIIFSPPPPITTLGSGDDDLDNYSSSFHFSPLIVAVIGILTSTFILVTYYTIISRFCKNRINDPINSQMEHNHEDGMNNELVQVSSSASGLDETLIKSITVCKYKKNSVLVDGSDCSVCLSEFVENESLRLLPTCNHAFHLPCIDPWLKSHSSCPLCRSNIDPNQRDCSSVLMEVPTSMNMSINALEYQHRSDDVVIVIQSSETSSQQDDSVSFADEVLPKWPGEGDAANNDEENNIDQLNLSNVRRVSVRDILNDNEHDMEFPREGSDTGSSRGASEGEKSEENGKREVMNMDTTRVLNYGCGRDCGNDCSNCDCGHCDVDCSRCGVNYFVIKTTMVALRPDADASL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1680 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 196 IPR013083 -
Lal2g1680 380 Pfam Ring finger domain 147 190 IPR001841 -
Lal2g1680 380 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 249 IPR044675 -
Lal2g1680 380 SMART ring_2 148 189 IPR001841 -
Lal2g1680 380 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Lal2g1680 380 SUPERFAMILY RING/U-box 133 196 - -
Lal2g1680 380 CDD RING-H2_PA-TM-RING 147 190 - -
Lal2g1680 380 MobiDBLite consensus disorder prediction 287 321 - -
Lal2g1680 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 3 249 - -
Lal2g1680 380 MobiDBLite consensus disorder prediction 250 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1680 Lal-Chr2 19153037 19154469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1680 1 312 C3H Transcription Factor Family AT3G03550 44.745 6.17e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1680 - - lang:109355345 572.007