Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1623 ATGGATTCGGGAGTCGATTACGGACTGGGGAAGATAGATGAAGCAGCAGAAACTAATGTCCGCACCACATCACATCTTAAAAATATTTTGGAAATAATCAAAACAGCTGATAAGAAGTGGATCACGTTTGGGGATTTTGAGAGGAGAGGTGAGAAGAAGAAAGAAAGTGAGGAGATGAGGGAGAATCGGGGATCCTCTCTCCGGCGACGGCTACTAACACTGTTCCGGCAACGAGTCCATGAGGAGCTTTTCATATCATCATCTCTTCCTCAGCAGCGACGACGACGCCCTGTGGTGCGGAGACGGCGGCGACTCGGTGGCGTTTTTTCTTTCCATCTCGGCATGGGGGGTTTAATGCCATTTCTATTTAGGTGGAAAGAGATGACATATGTGATGAAATATGTGCACCAAAGTGAGGGGAGTCTTCCCATTAAATTTGCTGCCATGCCATCTATATCAAGTTTTTCTGGTCTTCATGAACCAATTATCAGTGCAATCACAGTTTGTAAGCATAAGAAAGGAGAGGGTTTCACTGAAGGAACTGAGTGTTCTGTTTGTTTGAGTAAGTTTCAAGAAGATGAGAGTCTAAGACTTTTGCCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTGCATCTCATACCAATCGTCCTATGTGTAGAGCTCCAATTGTTACCAACCCTACAAGGATTCCATCTCTTATGCCTAATAATGTTGTTGTTGATCCAACTTCATTGGAAAATAGTGCTCCTCATACCCCTCAAGGACTTGAACTTAGGAATGGTTCAGAAGAAGAAGGAGAATTGGAAGTTCAAGATGAGACAAGGGTATGTGAAACTGAAAGTGTTGTGGTGAATATAAGACCAAGAAGATCTGTTTCTTTGGATTCATCTTCTGTTGCAAATATAAATCTTGCTCTTGCAAATGTTCAATCATCAGTTCAAAGTGGTGAAAATGAAGGGATTGTTTCAAAGAGGTTTATTGCTGGAAATGAGAATTTTCCAACTACGTCCAATTCCAAAAGAAGCTCATCTTTTAGGACAAGATATCTGCATATCTACGAAGTTACTAACTCCTAG 1092 0.4139 MDSGVDYGLGKIDEAAETNVRTTSHLKNILEIIKTADKKWITFGDFERRGEKKKESEEMRENRGSSLRRRLLTLFRQRVHEELFISSSLPQQRRRRPVVRRRRRLGGVFSFHLGMGGLMPFLFRWKEMTYVMKYVHQSEGSLPIKFAAMPSISSFSGLHEPIISAITVCKHKKGEGFTEGTECSVCLSKFQEDESLRLLPKCHHAFHLPCIDTWLASHTNRPMCRAPIVTNPTRIPSLMPNNVVVDPTSLENSAPHTPQGLELRNGSEEEGELEVQDETRVCETESVVVNIRPRRSVSLDSSSVANINLALANVQSSVQSGENEGIVSKRFIAGNENFPTTSNSKRSSSFRTRYLHIYEVTNS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1623 363 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 157 346 IPR044675 -
Lal2g1623 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 232 IPR013083 -
Lal2g1623 363 Pfam RING-like zinc finger 182 211 IPR001841 -
Lal2g1623 363 ProSiteProfiles Zinc finger RING-type profile. 183 225 IPR001841 -
Lal2g1623 363 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 157 346 - -
Lal2g1623 363 SMART ring_2 183 224 IPR001841 -
Lal2g1623 363 SUPERFAMILY RING/U-box 178 233 - -
Lal2g1623 363 CDD mRING-H2-C3H2C2D_ZSWM2 182 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1623 Lal-Chr2 18386787 18390625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1623 115 355 C3H Transcription Factor Family AT5G17600 36.332 3.60e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1623 - - lja:Lj6g3v2193690.1 211.46