Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1616 ATGTGGAGTATGATGGGTGAGTCAGATAGAAAACGACGTCACTTTAGCTCTATGTCACCTACAACTGTTGTTGCTCCTCATAAGAAGCTTCCCATCTTGCCTATCTCTCAGGACAAAACGAGGGTGAGTCTCGGCGCAACGGTAAGGTTGCTTGCCTTGTGGTTTAGAGGTTGTGTTTTTCGAGTCCCGTTCGACATTGCTGTACTTCAGTTTAAAAATCAAAAGCTCACAGAGAAATTAGAAACACAGAAGTTGGAGTATACATCTCTTCAGAATAAACTTTCTCAACTGAAGTTGAGGCAACAGCCATATGATTCTACATTAGCAGTGGTCAAGAAGTCTTGGGAGAAGCTGAATAATGATTTGGAGTTGTGTTCTGAGCGCACAAGAGAGTCTAGCTGCAAATTGGATTCCAAATTTTCATCAATCACAGGAGATGGTAGTCCATCAACCGTACAGGATGATTTTCTTAGCCGACTTCTGCAAACTGGTGCTACTGAAAGTTCCTCTGCATGTAACTTTGCAACCCAGATGGAAGAGAACAGAAACATTACAACTGAAAAAGCTAAAAGCAGTTTTAAAAATATAATGACAGCTATTAATAACTTATGGTGCCTGAAGGATGGATTGCATACTTCGGTACTGAAAAAGCTTCGAGAAGGTGTTTCATGCAGGCAGAACTTGTCCATTGATCCGGAGGAAGTTAGAAACTTAAGATTGACATTCAGTGAACTTCATATAAAGCACAAGTCTTTAGCAAGTGAGCTCTTATGTCATAGAGACCTTGCTATAAAAAATAAAGCTGACCTTAAAAGGTTAAAAGGCGAGCTGGAAAGCACTGTTGCAGAATTAGAAGAAAGCAATCACAGTCTTGTGACTCTTAAGGAAGAGAGAGAGGCTGCAAAAGGGGTGGTTCTCCCGGTCTTAAGTGTCGGAAGTACGCAGGTTGCTAGCGATAAGGCCAAAGATAAGCAAAACGATTTGCTTGATATGGAATCTAATCTGAAGGAGCTATTGGACCAAGTTTCATCTCGATTAGTGGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTACAGCAGTCATGTGATCTGCAGAATACATTGAAGAATATGAAGTGTATTACTTCTTCCCGTGCTTTCCAATTGGTTAGAGATCAGATAGAAAAATCAAAGTCCAGAGTTCTTGAATATCAGGCTTTGTTTGAAAAACTACAGGTTGAGAAGGATAATCTTGCATGGAGGGAGAGGGAGTGGTACATTAAAAATGACATAGCAGATATTTTTCAAAGATCTGTCACTGTTTCTGATTCAAGAGTAGCTGATTTACGGGCTGAGATACAAAAAAAGATAGATGAAAGGGCTGTGATTGAAAATAAGTTGGAAGAGGAAGCACGAGAACCAGGAAGGACACAAGTCATTGCCGAATTTAAATCCTTGGTTTCTTCATTTCCCAAGGAAATGGAATCTATGGAGACCGAACTAAGTAAGTATAAAGAATCAGCTTCAGATATTCATACTCTGCGTGCAGACTTGGCATCTTTTGCTAGTATTGTTGAGAGGAAGGTAAAAGAATGTCACGTTTTTTCTGTTAGGTCTGCTGGCCAACATGCTGAGATAAACAGGCTGCATGCTGTGGTTCGAGACTTGAGACTGACTGAGCAACAGAATAATTTGTTCTTGGAAATGTATAGATATGAGTCCATTGATTCAAGGAATGTCCTAGAAGCAAGAGAATCAGAATACAAAGCACGGGCACTTGTACAAATGTTGACATCTTCTCTTGATGAGCACAAGTTAGAACTTCAAGTTAAGACAGCAATTGAAGCAGAAGCCAGATCTCAACAAAGGCTGGCTGCTGCTGAAGCAGAGATAGTGGACATGAGACAGACGTTAGATGCTTCTAAAAGGAAGATTTTTACACTGTCTGAGGTCTTGAAATCAAAAAACAAAGAAAATGAGGCTTACTTATCTGAAGTAGAGACTATTGGACAGGCATATGGTGAGATGCAAGGTCAGAACCAACATCTTTTGCAGCAGATAACTGAGAGAGATGATTATAATATTAAGCTTGTTTTAGAGGGTTTAAGAGCAAGACAAAATCTGGGTTCATTGGTCATGGAGAAGCGATCAATTGAACTTGAGATTCAGCAAGCAAATGTATCCCGGAGTTTATATGACACAAAGGCTGCAAGAATTGAAGACAAGTTGAAGTTTTGTTCAGATCATATCCAAAGACTTGCACGGGATAAGCTCCGAAGTTCTGCCACTTTGGAATTTATACAAAGTAAGCTGTTTGATGTTAGAAGAACATCTCAGCAGGCTAGGGATACATTAGATGAAGTACAGTCTAAAGTCAGCAGTAGTCGAGTGACTCGTATGGAGTTGCAAGTAGAACATGAAAAAGAAAGGTTCGCCAAGAAAAGAATAGAGGAGGAGCTGGAGGCTGCCACAAGAAAATTTTCATGCTTTAAAGCACAGAGTGAGGGCTCTTCATTGATTGAAAGACTTCAACATGAACTGGAAGAGTACAGGGAAATTGTCAAGTGCACTATTTGCCGAGACAGGACAAAACAGGTGGTAATTACCAAATGCTTCCACCTGTTCTGCAATCAATGTGTCCAGGCAGTTGCCGGAAGTAGGCACCGCAAATGTCCACTATGTGGCGCAAGCTTTGGGGCTAATGATGTTAAGCCTGTTTATATGTAA 2712 0.4034 MWSMMGESDRKRRHFSSMSPTTVVAPHKKLPILPISQDKTRVSLGATVRLLALWFRGCVFRVPFDIAVLQFKNQKLTEKLETQKLEYTSLQNKLSQLKLRQQPYDSTLAVVKKSWEKLNNDLELCSERTRESSCKLDSKFSSITGDGSPSTVQDDFLSRLLQTGATESSSACNFATQMEENRNITTEKAKSSFKNIMTAINNLWCLKDGLHTSVLKKLREGVSCRQNLSIDPEEVRNLRLTFSELHIKHKSLASELLCHRDLAIKNKADLKRLKGELESTVAELEESNHSLVTLKEEREAAKGVVLPVLSVGSTQVASDKAKDKQNDLLDMESNLKELLDQVSSRLVELKSLHEERIRILQQSCDLQNTLKNMKCITSSRAFQLVRDQIEKSKSRVLEYQALFEKLQVEKDNLAWREREWYIKNDIADIFQRSVTVSDSRVADLRAEIQKKIDERAVIENKLEEEAREPGRTQVIAEFKSLVSSFPKEMESMETELSKYKESASDIHTLRADLASFASIVERKVKECHVFSVRSAGQHAEINRLHAVVRDLRLTEQQNNLFLEMYRYESIDSRNVLEARESEYKARALVQMLTSSLDEHKLELQVKTAIEAEARSQQRLAAAEAEIVDMRQTLDASKRKIFTLSEVLKSKNKENEAYLSEVETIGQAYGEMQGQNQHLLQQITERDDYNIKLVLEGLRARQNLGSLVMEKRSIELEIQQANVSRSLYDTKAARIEDKLKFCSDHIQRLARDKLRSSATLEFIQSKLFDVRRTSQQARDTLDEVQSKVSSSRVTRMELQVEHEKERFAKKRIEEELEAATRKFSCFKAQSEGSSLIERLQHELEEYREIVKCTICRDRTKQVVITKCFHLFCNQCVQAVAGSRHRKCPLCGASFGANDVKPVYM 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1616 903 PANTHER RING FINGER PROTEIN-RELATED 64 903 IPR013956 GO:0004842|GO:0010390
Lal2g1616 903 ProSitePatterns Zinc finger RING-type signature. 866 875 IPR017907 -
Lal2g1616 903 SMART ring_2 851 889 IPR001841 -
Lal2g1616 903 MobiDBLite consensus disorder prediction 1 20 - -
Lal2g1616 903 MobiDBLite consensus disorder prediction 1 16 - -
Lal2g1616 903 Pfam Zinc finger, C3HC4 type (RING finger) 849 891 - -
Lal2g1616 903 Coils Coil 267 297 - -
Lal2g1616 903 Coils Coil 441 468 - -
Lal2g1616 903 SUPERFAMILY RING/U-box 843 902 - -
Lal2g1616 903 Coils Coil 66 100 - -
Lal2g1616 903 Coils Coil 835 855 - -
Lal2g1616 903 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 64 903 - -
Lal2g1616 903 CDD RING-HC_BRE1_like 849 890 - -
Lal2g1616 903 Coils Coil 321 341 - -
Lal2g1616 903 ProSiteProfiles Zinc finger RING-type profile. 851 889 IPR001841 -
Lal2g1616 903 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 833 903 IPR013083 -
Lal2g1616 903 Coils Coil 801 828 - -
Lal2g1616 903 Coils Coil 605 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1616 Lal-Chr2 18208218 18239434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1616 851 902 C3H Transcription Factor Family AT2G42030 37.736 6.58e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1616 K10696 - gmx:100790744 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1616 2 18208218 18239434 Lal2g1616 2 18208218 18239434 ECH
Lal2g1616 2 18208218 18239434 Lal9g1462 9 16888620 16908484 LSH