Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1614 ATGAACCTTACTTACGAGCAGAGGCTTCAGGCCGTGGCCAGAATCGTACTCGACAATGACGCACGCGCCGTCGATACGCCACCGTGTCAGGCGGATGAACTTGGGCTGAGAGCAACCCTCAAACCTCACCAAGTGGAAGGGATTTCGTGGCTCGTACGGAGGTACAAACTCGGAGTCAACGTTGTCCTCGATGGGACTAGGCAAGACTTTGCAAGCTATCTCCTTTTTATGCTACTTAAAAGTGCGCCAGTTGTCACATGGGCCATTTTTGTGACAGATGGTTGGGTATCAGAGATAGTTAAGTTTGCCCCTAAACTAGAAGTCTTCAAATATGTCGGAGATAAAGAATACAGGCGCAGTCTACGGAAGAAAGTACATGATCATGTAAAAGGGCAGTCACCAAGACTTAATGTCCTTTTACCTTTTGATGTGCTGTTAACAACATATGACATTGTACTGATGGACCAAGATTTTCTTTCTCAAATTCCATGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACTCTAAAAGCGTTTTGTTTAATGTTCTCAAAGATCGGTATATCATGCCAAGACGGTTGTTGATGACTGGCACACCTATTCAAAATAACCTTTCTGAACTCTGGGCATTGATGTATTTCTGCATGCCTTCTGCATTTGGTACACTCGATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTTACATCAGTTCATGATGCACCAAAGGTAAAGGGGCGACTTAAAATTCTGAGAAGTGTACTGAGAGCCTTTATGCTTCGACGAACCAAATCAGAGCTAATTGAGCGTGGAAATCTAGTGTTGCCACCTCTCACTGAGACAACTGTATTGATACCCCTTGCCATCCTGCAGAAAAAGGTCTACATGTCCATATTGAGGAAGGAGCTTCCGAAGCTACTTGCACTATCTTCTGGAGCTTCAAATCACCCCTCACTACAGAATATTGTGATACAGCTAAGAAAAGCTTGCAGTCATCCTTACCTATTTCCAGGTATTGAGCCTGAACCGTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTGCTGATTCTGGACCAACTTCTTCAGAAGCTACATTCGTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAGGATTTTCTGGAGTTACGAAACTACTCATATGAGCGTCTTGATGGATCTATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTAGCTCATCATCTAATACGGGCTTGAACTCTGAAGTTGATCACAATGAAGCTTTTGTTTTCATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAACCTTGTGGCTGCTGATACTGTTATATTCTATGAACAAGACTGGAACCCTCAGGTTGACAAGCAAGCTCTGCAGCGAGCTCATAGAATCGGCCAGATGAACCATGTTTTGTGTATAAACCTTGTTACCGAACATACAGTGGAGGAGGTAATTATGCGGAGGGCGGAAAGAAAATTGCGGCTGAGCCTCAATGTTATGGGTGATAATATTCTGGTAGATGAAGATAAAGAAACATCTGGAGTTGGAACTGGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGACCCCACTGACATAAACAATGGAAAGCACAAGGACATAGACTTACCAGAAATTAATGCTATTGCTGACAAGGTGATTGCTATTCGTAATGAACAGACATTTGACAAGGATGATAGGAAATTTGAAGTCAATCCAAGAAATATTTTAAAGGCCTATGATGTTAAGGAAGGAGAATCTGATTCTTACTCTTGTGATCTTGATCTAGACGAGACTTCATATATCTCATGGGTTAAAAAATTTGAGGAAGTGTCTAAATCAAGTTCTGACCCAATTAAGGAGTTGAGGCGTAGAAGGAACTTAGATGAGGATAATAGTGTAAAACTTGAGTCTGCAAAAAAGAAGGCAGAGGAAAAGAAGCTGTCTAAGTGGAAGGCTCTTGGATACAATTCGTTGAGCGTGAAAGACCCCGTCATCCCAGCCGATGGTGATGATATTACATCAGTTACCGGGTCTGTTAATTTTGTTTATGGAGATTGTACAACGCCATCAAACATTTGTCCATCTGAACCTGCTATAGTATTCAGCTGTGTTGATACCTCTGGACACTGGGGCCATGGTGGAATGTTTGATGCACTGACCAGACTTTCTAGGGGCGTTAGTGATGCATATGAACGGGCTTCTGAACATGGTGACCTGCATCTTGGAGATCTCCATCTCATAAGGCTTGAAGATGGTTCTGATGAACAAAACATGGATGGTAATGTTCCGAAGTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAATCCCTCGCAGTGAGATCTCACTTCAGCACTTGGAAAGCTGCTTATCAAAGGCTTCATTTTCAGCTGCTCAAAATTCTGGTAACATGATTCCTAATTTATATAATTCGATGTTTTATAGTTACATTGATCTTCCATTCCGTTTGTTATTTCGTCCTCTTATGTGCTTTCAATCATTATGTAAAGTTAACATATTGAAACTTTTACTGATGCCAAATTCTTTGTTTCTGTTCAAAGCATCAATCCACATGCCTAGGATTGGTTATCAAGATGGATCTGATCGTTCTGAGTGGTACACAGTAGAAAGGCTTCTTAGAAAATATGCTTCTCTTTACAACATAAAGATCTTTGTATTATTATCGACGATCGCGTTAAGGTTCCGGGTTCCGTTGATTTCCCAGTCTCGAAAAGGACAGTTCTTACTGATCCGATGTTATCGATATTGTTATAGACTTTCGCCGATTGAGATAAAGTCTATTGTTGTTGCAGTTAAGATAGTG 2898 0.4148 MNLTYEQRLQAVARIVLDNDARAVDTPPCQADELGLRATLKPHQVEGISWLVRRYKLGVNVVLDGTRQDFASYLLFMLLKSAPVVTWAIFVTDGWVSEIVKFAPKLEVFKYVGDKEYRRSLRKKVHDHVKGQSPRLNVLLPFDVLLTTYDIVLMDQDFLSQIPWQYAIIDEAQRLKNSKSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSAFGTLDQFLSTFKDISDLTSVHDAPKVKGRLKILRSVLRAFMLRRTKSELIERGNLVLPPLTETTVLIPLAILQKKVYMSILRKELPKLLALSSGASNHPSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHSSGHRVLLFAQMTHTLDILQDFLELRNYSYERLDGSIRAEERFAAIRSFSSSSSNTGLNSEVDHNEAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLRLSLNVMGDNILVDEDKETSGVGTGDLKSIIFGLHMFDPTDINNGKHKDIDLPEINAIADKVIAIRNEQTFDKDDRKFEVNPRNILKAYDVKEGESDSYSCDLDLDETSYISWVKKFEEVSKSSSDPIKELRRRRNLDEDNSVKLESAKKKAEEKKLSKWKALGYNSLSVKDPVIPADGDDITSVTGSVNFVYGDCTTPSNICPSEPAIVFSCVDTSGHWGHGGMFDALTRLSRGVSDAYERASEHGDLHLGDLHLIRLEDGSDEQNMDGNVPKWVALAVVQSYNPRRKIPRSEISLQHLESCLSKASFSAAQNSGNMIPNLYNSMFYSYIDLPFRLLFRPLMCFQSLCKVNILKLLLMPNSLFLFKASIHMPRIGYQDGSDRSEWYTVERLLRKYASLYNIKIFVLLSTIALRFRVPLISQSRKGQFLLIRCYRYCYRLSPIEIKSIVVAVKIV 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1614 966 Gene3D - 277 583 IPR027417 -
Lal2g1614 966 Gene3D Leucine Aminopeptidase, subunit E, domain 1 699 922 IPR043472 -
Lal2g1614 966 SUPERFAMILY Macro domain-like 700 917 IPR043472 -
Lal2g1614 966 CDD SF2_C_SNF 351 494 - -
Lal2g1614 966 PANTHER HELICASE CHR10-RELATED 878 917 - -
Lal2g1614 966 PANTHER HELICASE CHR10-RELATED 4 831 - -
Lal2g1614 966 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 878 917 - -
Lal2g1614 966 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 4 831 - -
Lal2g1614 966 Pfam Helicase conserved C-terminal domain 359 483 IPR001650 -
Lal2g1614 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 529 IPR027417 -
Lal2g1614 966 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 530 IPR001650 -
Lal2g1614 966 Pfam SNF2-related domain 91 338 IPR000330 GO:0005524|GO:0140658
Lal2g1614 966 SMART helicmild6 388 483 IPR001650 -
Lal2g1614 966 SMART ultradead3 36 228 IPR014001 -
Lal2g1614 966 Gene3D - 17 276 IPR038718 -
Lal2g1614 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 265 IPR027417 -
Lal2g1614 966 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 220 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1614 Lal-Chr2 18140665 18163471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1614 357 521 RAD5 or RAD16-like Gene Family AT5G22750 35.758 1.72e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal2g1614 SNF2_N 2.4e-36 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1614 K20092 - gmx:100797182 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1614 2 18140665 18163471 Lal2g1614 2 18140665 18163471 ECH