Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal2g1614 | ATGAACCTTACTTACGAGCAGAGGCTTCAGGCCGTGGCCAGAATCGTACTCGACAATGACGCACGCGCCGTCGATACGCCACCGTGTCAGGCGGATGAACTTGGGCTGAGAGCAACCCTCAAACCTCACCAAGTGGAAGGGATTTCGTGGCTCGTACGGAGGTACAAACTCGGAGTCAACGTTGTCCTCGATGGGACTAGGCAAGACTTTGCAAGCTATCTCCTTTTTATGCTACTTAAAAGTGCGCCAGTTGTCACATGGGCCATTTTTGTGACAGATGGTTGGGTATCAGAGATAGTTAAGTTTGCCCCTAAACTAGAAGTCTTCAAATATGTCGGAGATAAAGAATACAGGCGCAGTCTACGGAAGAAAGTACATGATCATGTAAAAGGGCAGTCACCAAGACTTAATGTCCTTTTACCTTTTGATGTGCTGTTAACAACATATGACATTGTACTGATGGACCAAGATTTTCTTTCTCAAATTCCATGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACTCTAAAAGCGTTTTGTTTAATGTTCTCAAAGATCGGTATATCATGCCAAGACGGTTGTTGATGACTGGCACACCTATTCAAAATAACCTTTCTGAACTCTGGGCATTGATGTATTTCTGCATGCCTTCTGCATTTGGTACACTCGATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTTACATCAGTTCATGATGCACCAAAGGTAAAGGGGCGACTTAAAATTCTGAGAAGTGTACTGAGAGCCTTTATGCTTCGACGAACCAAATCAGAGCTAATTGAGCGTGGAAATCTAGTGTTGCCACCTCTCACTGAGACAACTGTATTGATACCCCTTGCCATCCTGCAGAAAAAGGTCTACATGTCCATATTGAGGAAGGAGCTTCCGAAGCTACTTGCACTATCTTCTGGAGCTTCAAATCACCCCTCACTACAGAATATTGTGATACAGCTAAGAAAAGCTTGCAGTCATCCTTACCTATTTCCAGGTATTGAGCCTGAACCGTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTGCTGATTCTGGACCAACTTCTTCAGAAGCTACATTCGTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAGGATTTTCTGGAGTTACGAAACTACTCATATGAGCGTCTTGATGGATCTATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTAGCTCATCATCTAATACGGGCTTGAACTCTGAAGTTGATCACAATGAAGCTTTTGTTTTCATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAACCTTGTGGCTGCTGATACTGTTATATTCTATGAACAAGACTGGAACCCTCAGGTTGACAAGCAAGCTCTGCAGCGAGCTCATAGAATCGGCCAGATGAACCATGTTTTGTGTATAAACCTTGTTACCGAACATACAGTGGAGGAGGTAATTATGCGGAGGGCGGAAAGAAAATTGCGGCTGAGCCTCAATGTTATGGGTGATAATATTCTGGTAGATGAAGATAAAGAAACATCTGGAGTTGGAACTGGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGACCCCACTGACATAAACAATGGAAAGCACAAGGACATAGACTTACCAGAAATTAATGCTATTGCTGACAAGGTGATTGCTATTCGTAATGAACAGACATTTGACAAGGATGATAGGAAATTTGAAGTCAATCCAAGAAATATTTTAAAGGCCTATGATGTTAAGGAAGGAGAATCTGATTCTTACTCTTGTGATCTTGATCTAGACGAGACTTCATATATCTCATGGGTTAAAAAATTTGAGGAAGTGTCTAAATCAAGTTCTGACCCAATTAAGGAGTTGAGGCGTAGAAGGAACTTAGATGAGGATAATAGTGTAAAACTTGAGTCTGCAAAAAAGAAGGCAGAGGAAAAGAAGCTGTCTAAGTGGAAGGCTCTTGGATACAATTCGTTGAGCGTGAAAGACCCCGTCATCCCAGCCGATGGTGATGATATTACATCAGTTACCGGGTCTGTTAATTTTGTTTATGGAGATTGTACAACGCCATCAAACATTTGTCCATCTGAACCTGCTATAGTATTCAGCTGTGTTGATACCTCTGGACACTGGGGCCATGGTGGAATGTTTGATGCACTGACCAGACTTTCTAGGGGCGTTAGTGATGCATATGAACGGGCTTCTGAACATGGTGACCTGCATCTTGGAGATCTCCATCTCATAAGGCTTGAAGATGGTTCTGATGAACAAAACATGGATGGTAATGTTCCGAAGTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAATCCCTCGCAGTGAGATCTCACTTCAGCACTTGGAAAGCTGCTTATCAAAGGCTTCATTTTCAGCTGCTCAAAATTCTGGTAACATGATTCCTAATTTATATAATTCGATGTTTTATAGTTACATTGATCTTCCATTCCGTTTGTTATTTCGTCCTCTTATGTGCTTTCAATCATTATGTAAAGTTAACATATTGAAACTTTTACTGATGCCAAATTCTTTGTTTCTGTTCAAAGCATCAATCCACATGCCTAGGATTGGTTATCAAGATGGATCTGATCGTTCTGAGTGGTACACAGTAGAAAGGCTTCTTAGAAAATATGCTTCTCTTTACAACATAAAGATCTTTGTATTATTATCGACGATCGCGTTAAGGTTCCGGGTTCCGTTGATTTCCCAGTCTCGAAAAGGACAGTTCTTACTGATCCGATGTTATCGATATTGTTATAGACTTTCGCCGATTGAGATAAAGTCTATTGTTGTTGCAGTTAAGATAGTG | 2898 | 0.4148 | MNLTYEQRLQAVARIVLDNDARAVDTPPCQADELGLRATLKPHQVEGISWLVRRYKLGVNVVLDGTRQDFASYLLFMLLKSAPVVTWAIFVTDGWVSEIVKFAPKLEVFKYVGDKEYRRSLRKKVHDHVKGQSPRLNVLLPFDVLLTTYDIVLMDQDFLSQIPWQYAIIDEAQRLKNSKSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSAFGTLDQFLSTFKDISDLTSVHDAPKVKGRLKILRSVLRAFMLRRTKSELIERGNLVLPPLTETTVLIPLAILQKKVYMSILRKELPKLLALSSGASNHPSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHSSGHRVLLFAQMTHTLDILQDFLELRNYSYERLDGSIRAEERFAAIRSFSSSSSNTGLNSEVDHNEAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLRLSLNVMGDNILVDEDKETSGVGTGDLKSIIFGLHMFDPTDINNGKHKDIDLPEINAIADKVIAIRNEQTFDKDDRKFEVNPRNILKAYDVKEGESDSYSCDLDLDETSYISWVKKFEEVSKSSSDPIKELRRRRNLDEDNSVKLESAKKKAEEKKLSKWKALGYNSLSVKDPVIPADGDDITSVTGSVNFVYGDCTTPSNICPSEPAIVFSCVDTSGHWGHGGMFDALTRLSRGVSDAYERASEHGDLHLGDLHLIRLEDGSDEQNMDGNVPKWVALAVVQSYNPRRKIPRSEISLQHLESCLSKASFSAAQNSGNMIPNLYNSMFYSYIDLPFRLLFRPLMCFQSLCKVNILKLLLMPNSLFLFKASIHMPRIGYQDGSDRSEWYTVERLLRKYASLYNIKIFVLLSTIALRFRVPLISQSRKGQFLLIRCYRYCYRLSPIEIKSIVVAVKIV | 966 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal2g1614 | 966 | Gene3D | - | 277 | 583 | IPR027417 | - | |
Lal2g1614 | 966 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 699 | 922 | IPR043472 | - | |
Lal2g1614 | 966 | SUPERFAMILY | Macro domain-like | 700 | 917 | IPR043472 | - | |
Lal2g1614 | 966 | CDD | SF2_C_SNF | 351 | 494 | - | - | |
Lal2g1614 | 966 | PANTHER | HELICASE CHR10-RELATED | 878 | 917 | - | - | |
Lal2g1614 | 966 | PANTHER | HELICASE CHR10-RELATED | 4 | 831 | - | - | |
Lal2g1614 | 966 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 878 | 917 | - | - | |
Lal2g1614 | 966 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 4 | 831 | - | - | |
Lal2g1614 | 966 | Pfam | Helicase conserved C-terminal domain | 359 | 483 | IPR001650 | - | |
Lal2g1614 | 966 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 163 | 529 | IPR027417 | - | |
Lal2g1614 | 966 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 362 | 530 | IPR001650 | - | |
Lal2g1614 | 966 | Pfam | SNF2-related domain | 91 | 338 | IPR000330 | GO:0005524|GO:0140658 | |
Lal2g1614 | 966 | SMART | helicmild6 | 388 | 483 | IPR001650 | - | |
Lal2g1614 | 966 | SMART | ultradead3 | 36 | 228 | IPR014001 | - | |
Lal2g1614 | 966 | Gene3D | - | 17 | 276 | IPR038718 | - | |
Lal2g1614 | 966 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 13 | 265 | IPR027417 | - | |
Lal2g1614 | 966 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 118 | 220 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal2g1614 | Lal-Chr2 | 18140665 | 18163471 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal2g1614 | 357 | 521 | RAD5 or RAD16-like Gene Family | AT5G22750 | 35.758 | 1.72e-22 | 102 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Lal2g1614 | SNF2_N | 2.4e-36 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal2g1614 | K20092 | - | gmx:100797182 | 1251.5 |