Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1602 ATGGACTTTGGAGGGAACATGTTTTGTCTAGGTATTAGAGACCAAAGTGGTAACAATAACAGCAACAGTTATGGTTGGGATTCATGGGAAATCACTACATCTACTAGTTCTAAGCTTATCAACGCATTCCACCATATCACTGCGACGGAGAACGCCACCACCGTTAATAATAGCCACGAGGCGGAAGGTCTAGCAAACTCTCTCATGTTTCTTCCTCAACCCCACAACGGAACCGGCGGTGTAAACCATCATTACCACCATCACCACCGCCAAAACCAGCCGCATCCATATGGCGGAGATGGGTCACAGAGAGTGCATGTGGACCCACATCTCATGTGCTTGAAGCTTGGGAAAAGGAATTACTTTGACACTAGTGGTGCTGCTCTTAAGGGTGGTGGTGGTGGTGTGAAGACGGTGTCGTTGGCGGCGACGGTGCCGAGATGTCAGGTGGAGGGGTGCCACGTGGCTTTGTTGAATGCGAAGGATTATCACCGGAGGCATAAGGTTTGTGAGATGCATTCAAAGGCACCAAAAGTTGTGGTGTTAGGGTTGGTACAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGAAGGAGACTAGCAGGTCACAATGAGCGAAGAAGAAAGAACCCACACAATTCTGTTAAAAGAAATACTGCTTCAGAAGGATATGTTCTCTCTCTTCTGCCATCTAGGAGTAACTCTTGGGTTTCTGATGCTGATCTCTCCATAAGATGTAGGGCAGCCCTACACGAATTAATAGAAGAAAACCGTGCTGCACTCATGGCTAGGCCACTTGTTCCAGAGAGAGATTGGTATTTACACCATCAACAAGGAGTAGAAGACTTCAAGATGATCCAACCTGATTCTAATTATTTCCCACAACAGATGTTTCATCAGACACAGTAA 945 0.4635 MDFGGNMFCLGIRDQSGNNNSNSYGWDSWEITTSTSSKLINAFHHITATENATTVNNSHEAEGLANSLMFLPQPHNGTGGVNHHYHHHHRQNQPHPYGGDGSQRVHVDPHLMCLKLGKRNYFDTSGAALKGGGGGVKTVSLAATVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGLVQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKNPHNSVKRNTASEGYVLSLLPSRSNSWVSDADLSIRCRAALHELIEENRAALMARPLVPERDWYLHHQQGVEDFKMIQPDSNYFPQQMFHQTQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1602 314 Gene3D - 140 209 IPR036893 GO:0003677|GO:0005634
Lal2g1602 314 Pfam SBP domain 148 221 IPR004333 GO:0003677
Lal2g1602 314 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Lal2g1602 314 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 314 IPR044817 GO:0003677
Lal2g1602 314 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 37 314 - -
Lal2g1602 314 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1602 Lal-Chr2 17965893 17986120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1602 112 221 SBP-box Gene Family AT1G27370 53.600 4.12e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal2g1602 SBP 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1602 - - gmx:100806582 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1602 2 17965893 17986120 Lal2g1602 2 17965893 17986120 ECH