Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1590 ATGGCTTCTACACTGAGACATGCATTTTCTCATATACTTATTCTTGTAGCTTTCCTCTTAACATTCCTAGTGATGCCTTCTTCTTGTTTTAACATTGGGAAGATTCTTAATGTTACATACTCTACATCTGGATCAGATTGGTCAACTGCAATAGCTACATGGTATGGACCTGCTCATGGTGATGGAAGTGAAGGTGGTGCTTGTGGATATGGTAGATCTGTTGGGCAGCCTCCATTCTCATCAATGATAACTGCTGGAAGTCCTATTTTGTATAAGTCTGGCAAAGGCTGTGGTTCTTGTTATGAGGTTAGGTGCACTATGAATTCTGCATGCTCTGGCAATCCCGTAACGGTTGTCTTAAGTGATGAGTGTCCGGGTTGCTCAGATGCTGAATTTCATTTTGACTTGAGTGGTAGTTCTTTCAGCGCTATGGCAATTTCAGGTGAGGATCAAACGCTACTCAATGCAGGGAAAATAAAGATTCAATATAGAAGGGTTGAATGCAATTTTCTTGGTAGGTCAATAGCTTTCCACGTAGACTCTGGATCGAACCAAGAATATTTTGCAACCCTTATAGAATATGAGGATGGAGATGGTGATCTTGCCAATGTAGAACTCAAGGAATCACTTGACTCAGGCTCATGGTATTCCATGCAACAATCATGGGGTGCTGTTTGGAAACTTGACCATGGCTCACCACTGGATGCACCATTCTCTATCAGGCTAACCACACTTAAGTCCAATAAAACTATTGTGGCTAATGATGTTATTCCTGAAGGGTGGAATCCTGGTCAAACATACCGATCAATTGTGAATTTTTCCTTCTAA 828 0.413 MASTLRHAFSHILILVAFLLTFLVMPSSCFNIGKILNVTYSTSGSDWSTAIATWYGPAHGDGSEGGACGYGRSVGQPPFSSMITAGSPILYKSGKGCGSCYEVRCTMNSACSGNPVTVVLSDECPGCSDAEFHFDLSGSSFSAMAISGEDQTLLNAGKIKIQYRRVECNFLGRSIAFHVDSGSNQEYFATLIEYEDGDGDLANVELKESLDSGSWYSMQQSWGAVWKLDHGSPLDAPFSIRLTTLKSNKTIVANDVIPEGWNPGQTYRSIVNFSF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1590 275 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Lal2g1590 275 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Lal2g1590 275 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Lal2g1590 275 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Lal2g1590 275 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Lal2g1590 275 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Lal2g1590 275 Gene3D - 170 274 IPR036749 -
Lal2g1590 275 SUPERFAMILY Barwin-like endoglucanases 39 172 IPR036908 -
Lal2g1590 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Lal2g1590 275 PANTHER EXPANSIN-B3 11 274 - -
Lal2g1590 275 Gene3D - 34 169 IPR036908 -
Lal2g1590 275 SMART dpbb_1 83 163 IPR007112 -
Lal2g1590 275 Pfam Lytic transglycolase 84 163 IPR009009 -
Lal2g1590 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 173 IPR007112 -
Lal2g1590 275 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Lal2g1590 275 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Lal2g1590 275 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Lal2g1590 275 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Lal2g1590 275 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Lal2g1590 275 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Lal2g1590 275 PANTHER EXPANSIN-B2-RELATED 11 274 - -
Lal2g1590 275 SUPERFAMILY PHL pollen allergen 173 269 IPR036749 -
Lal2g1590 275 Pfam Expansin C-terminal domain 175 258 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1590 Lal-Chr2 17685969 17689573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1590 29 273 Expansin Gene Family AT1G65680 58.776 8.81e-111 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1590 - - gmx:548090 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1590 2 17685969 17689573 Lal2g1590 2 17685969 17689573 ECH