Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1583 ATGACTACTTCTTGTTTAAACCCTAGAAAGTTTCTTAATGCTTCATACGCATCAGGTTCAGATTGGTCACCTGCTATTGCCACTTGGTATGGACCTCCCAATGGTCTTGGAAGTGAAGGTGGTGCTTGTGGATATGCTAACATTGTTGGGCAACCTCCATTTTCATCAATGATATCAGCTGGAAGTCCTCGTTTGTATCAGTCGGGCAAAGGATGTGGTTCTTGTTACGAGGTGAAGTGTACTGGGAATAATGGATGCTCTGGGAAACCCGTGAAGGTAGTGATCACTGATGAATGTCCTGGGTGCTCAGCAACTGATTTTCATTTTGATTTGAGTGGCACTGCTTTTGGCGCCATGGCAAATTCAGGTCAAAGTGATAAGCTACGCAATGCTGGCAAAATACAAATTCAACATAGAAGGCACGCTCTAAATTTTAAATTGAAATTAGAAAATTATACTATTATAGTACAATGCAATTATCCTGGTGTATCAATAGCTTTTCGAGTGGATTCTGGATCAAATCCATATTATTTTGCTACTGTTATAGAATATGTGAGTGGAGATGGTGACCTAGCCAAAGTTGAACTCAAGGAAGCTAACTCAGGCTCATGGCATTCCATGCAACAATCATGGGGTGTTGTTTGGAAACTTGACAACCATGGATCTCCATTACAAGCACCATTCTCTATCAGGCTAACCACACTTAAGTCAGGAAAGACTATTGTGGCCAATAATGTGATTCCTAAAGGGTGGAATCCTGGAAACACTTACAAATCAACTGTGAATTTTCATAACTAA 798 0.4048 MTTSCLNPRKFLNASYASGSDWSPAIATWYGPPNGLGSEGGACGYANIVGQPPFSSMISAGSPRLYQSGKGCGSCYEVKCTGNNGCSGKPVKVVITDECPGCSATDFHFDLSGTAFGAMANSGQSDKLRNAGKIQIQHRRHALNFKLKLENYTIIVQCNYPGVSIAFRVDSGSNPYYFATVIEYVSGDGDLAKVELKEANSGSWHSMQQSWGVVWKLDNHGSPLQAPFSIRLTTLKSGKTIVANNVIPKGWNPGNTYKSTVNFHN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1583 265 SUPERFAMILY PHL pollen allergen 165 259 IPR036749 -
Lal2g1583 265 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576
Lal2g1583 265 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Lal2g1583 265 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Lal2g1583 265 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Lal2g1583 265 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Lal2g1583 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 140 IPR007112 -
Lal2g1583 265 Pfam Lytic transglycolase 59 137 IPR009009 -
Lal2g1583 265 PRINTS Major pollen allergen Lol pI signature 60 71 IPR005795 GO:0005576|GO:0019953
Lal2g1583 265 PRINTS Major pollen allergen Lol pI signature 80 90 IPR005795 GO:0005576|GO:0019953
Lal2g1583 265 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Lal2g1583 265 PANTHER EXPANSIN-B2-RELATED 3 264 - -
Lal2g1583 265 SMART dpbb_1 58 138 IPR007112 -
Lal2g1583 265 Pfam Expansin C-terminal domain 165 248 IPR007117 -
Lal2g1583 265 Gene3D - 8 142 IPR036908 -
Lal2g1583 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 259 IPR007117 -
Lal2g1583 265 PANTHER EXPANSIN-B3 3 264 - -
Lal2g1583 265 Gene3D - 160 264 IPR036749 -
Lal2g1583 265 SUPERFAMILY Barwin-like endoglucanases 13 141 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1583 Lal-Chr2 17619602 17622544 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1583 3 263 Expansin Gene Family AT1G65680 57.034 2.27e-106 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1583 - - gmx:100805408 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1583 2 17619602 17622544 Lal2g1583 2 17619602 17622544 ECH