Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1582 ATGGAGAAGCATAAGTGCAAGCTTTGCTTAAGGAGATTCTCCAATGGCAGAGCTTTGGGGGGTCACATGAGATCTCATATGATGAACTTTCCTCTTCCTAAAAAGCCACAAGAAGTTCAACTCAGTTTCGATGCTGAATCATCTTCTTCTTCATCTTCTGATGAAGAAGATGGTGATAATAATATTAACTATAAACGTGTTTGTTATGGCCTCAGAGAGAAACCCAAGAAGAGTGTTCGTCTTGAAGATCCTGAGTTTTCGAATGTGATCCTTCAAGATAGTGAGAGTGAGACCAAGTCTTCTAAGAACACAAGGTTAATGAGAGAACCATGTAACTATAGATCGAAAAGGACGCGGAAATTCGCGGTCTTCGATAATTGTAACAAGAACAGAAAGAAAGTTCATGAACGTGAATCAATTACGAAGATAATGAAATTAAGCGAAGATAGTAAAGCAGAATCGTGGGTGGTCGATCATGAACCTTTGTGTTCAAATTCTGATGTGACAACAGAGGAAGATGTTGCATTTTGTCTCATGATGCTGTCTAGGGACAAAGAATGGAAGAGACAGAAAGAACATGAACAAGAACAAGAACAAGAACAATCGATTAATAACCAATATTACGAAGAAGAAGAAGAAGAAGAAGATGGAGATGAAGATGAAGATGAAATGGAGAGATCCTTTGAAGAAGATAGTGACGATGAATCGGAGGAAGAGTATATATTTTCCAAGAACCGAGTACGAGGAGGAAGGTACAAATGTGAAACCTGCAACAAAGTTTTTAGATCTTATCAAGCATTAGGTGGTCACAGAGCGAGTCACAATAAGATCAAAGTGAAGATAAGTACTAAAATCAATGATGAACAAGAATTGGAGAATGAGAATGGTGGAACTTCTAGTCCTAAAATGGTGGTGGAAAAGAAAATTCATGAGTGCCCAGTTTGTTTCAGAGTTTTTGCTTCAGGTCAAGCACTGGGTGGACACAAAAGAACACATGTTATTGGATTAGCACCAGCAGCAACAACAACAACAAAACAAGTTTCAAGTTCAACAAAGCATGGAAACAGTTTCATAGATCTTAATCTCCCTGCCCCTGTTGATGATAATGATGAAATTTGCCAAATTGAGAGTTCTGCAGTTTTAGATGCAGAATTTGTGAACACCCATTAA 1170 0.3812 MEKHKCKLCLRRFSNGRALGGHMRSHMMNFPLPKKPQEVQLSFDAESSSSSSSDEEDGDNNINYKRVCYGLREKPKKSVRLEDPEFSNVILQDSESETKSSKNTRLMREPCNYRSKRTRKFAVFDNCNKNRKKVHERESITKIMKLSEDSKAESWVVDHEPLCSNSDVTTEEDVAFCLMMLSRDKEWKRQKEHEQEQEQEQSINNQYYEEEEEEEDGDEDEDEMERSFEEDSDDESEEEYIFSKNRVRGGRYKCETCNKVFRSYQALGGHRASHNKIKVKISTKINDEQELENENGGTSSPKMVVEKKIHECPVCFRVFASGQALGGHKRTHVIGLAPAATTTTKQVSSSTKHGNSFIDLNLPAPVDDNDEICQIESSAVLDAEFVNTH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1582 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 279 IPR013087 -
Lal2g1582 389 SMART c2h2final6 310 332 IPR013087 -
Lal2g1582 389 SMART c2h2final6 252 274 IPR013087 -
Lal2g1582 389 SMART c2h2final6 4 26 IPR013087 -
Lal2g1582 389 MobiDBLite consensus disorder prediction 205 238 - -
Lal2g1582 389 MobiDBLite consensus disorder prediction 188 242 - -
Lal2g1582 389 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 387 - -
Lal2g1582 389 Gene3D Classic Zinc Finger 250 332 - -
Lal2g1582 389 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lal2g1582 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 332 IPR013087 -
Lal2g1582 389 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Lal2g1582 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lal2g1582 389 MobiDBLite consensus disorder prediction 41 61 - -
Lal2g1582 389 Coils Coil 193 213 - -
Lal2g1582 389 MobiDBLite consensus disorder prediction 41 57 - -
Lal2g1582 389 SUPERFAMILY beta-beta-alpha zinc fingers 251 332 IPR036236 -
Lal2g1582 389 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 387 IPR044303 GO:0006355
Lal2g1582 389 ProSitePatterns Zinc finger C2H2 type domain signature. 312 332 IPR013087 -
Lal2g1582 389 Pfam C2H2-type zinc finger 251 276 - -
Lal2g1582 389 Pfam C2H2-type zinc finger 4 27 - -
Lal2g1582 389 Pfam C2H2-type zinc finger 310 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1582 Lal-Chr2 17542776 17543945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1582 1 375 C2H2 Transcription Factor Family AT3G60580 40.420 4.86e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal2g1582 zf-C2H2_6 1.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1582 - - lang:109360076 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1582 2 17542776 17543945 Lal2g1582 2 17542776 17543945 ECH