Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1513 ATGATTCAACCTCAAACCCATTTAAATGTAGCCAATAACAGCGGAGCCCGCGAATTGATGTGTATTCGAATCATAGGAGCTAGTAATCAGAGATATGGTTATATTGGTGACATTGTTGTTGCTGTAATAAAGGAAGCTGTACCAAATACGCCTTTAGAAAGATCAGAAGTGATCAGAACTGTAATTGTACGTACTTGTAAAGAACTCAAACGCAACAACGGTATCATAATACACTATAATGATAATGCTGCGGTCATCATTGATCAAGAAGGAAATCCAAAAGGAACCCGAATTTTTGGCGCAATGGCCAGGGAATTGAGACAGTTAAATTTCACTAAAATTGTTTCATTAGCATCGGAGTATGGCAAACCTACACCCAAAATGGGTTCGTGTAAAAATGGACGTATTGGTTCGCGTAAGCATGCTCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTTAACAATACCATTGTGACTGTTACTGATGTACGAGGGTGGGTAATTTCTTGTTCCTCCACTGGTACTTGTGGATTCAAGGGTACACGAAGAGGCAAATCTTTTGCCGCTCAAACCACAATAGCAAATGCTATTCTAAGAGTAGCGGATCAAGGCATGGAACGGGCGGAAGTCATGATAAAAGGTCCCGGTCTCGGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTCAAGCCGATACAATAGGCATTGCAATGCGAAGAGTTTTACTCGGAGAAATCGAGGGAACATGTATTACACGTGCAAAATCTGAGAAAATACCACATGATTATTCGACGCTAATAGGTATTCAAGAATCAGTCCACAAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGGGAGACGTCTATTTTTGTCAAAGGTCCTAGATATGTAACTGCTCAAGACATCCTCTTACCACCTTCTGTGGAAATTGTTGATAATACACAACATATAGCTAATCTAACAGAACCCATTAATTTTTATATTGGATTACAAATCGTGGGAAATCACAGATATCGTATAAAAACACTAACTAAATTTCAAGACAGAAGTTATCCTATAGATGCTGTATTCATGTCTGTTCGAAATGTAAATCATAGTATTCATTCTTACGTGAATGGTAATGAAAAACAAGAAATACTTTTTCTCGAAATATGGACAAATGGAAGTTTAACTCCTAAAGAAGCGCTTTTTGAAGCCTCCTGGAATTTGATTGATTGA 1251 0.3765 MIQPQTHLNVANNSGARELMCIRIIGASNQRYGYIGDIVVAVIKEAVPNTPLERSEVIRTVIVRTCKELKRNNGIIIHYNDNAAVIIDQEGNPKGTRIFGAMARELRQLNFTKIVSLASEYGKPTPKMGSCKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVRGWVISCSSTGTCGFKGTRRGKSFAAQTTIANAILRVADQGMERAEVMIKGPGLGDAALRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHDYSTLIGIQESVHKILMNLKEIVLRSNLYGTRETSIFVKGPRYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGLQIVGNHRYRIKTLTKFQDRSYPIDAVFMSVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALFEASWNLID 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1513 416 Gene3D Ribosomal protein S11 130 251 IPR036967 GO:0003735|GO:0005840|GO:0006412
Lal2g1513 416 SMART Ribosomal_L14_2 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lal2g1513 416 Pfam Ribosomal protein S11 148 233 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal2g1513 416 Hamap 50S ribosomal protein L14 [rplN]. 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lal2g1513 416 PANTHER - 145 378 - -
Lal2g1513 416 TIGRFAM rplN_bact: ribosomal protein uL14 1 120 IPR005745 GO:0003735|GO:0006412|GO:0015934
Lal2g1513 416 SUPERFAMILY RBP11-like subunits of RNA polymerase 232 416 IPR036603 GO:0006351|GO:0046983
Lal2g1513 416 SMART rpoldneu2 222 416 IPR011263 GO:0003899|GO:0006351
Lal2g1513 416 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 145 378 IPR011773 GO:0003677|GO:0003899|GO:0006351
Lal2g1513 416 Gene3D - 252 368 IPR036643 -
Lal2g1513 416 SUPERFAMILY Ribosomal protein L14 1 120 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lal2g1513 416 Pfam RNA polymerase Rpb3/RpoA insert domain 258 339 IPR011262 GO:0003899|GO:0006351|GO:0046983
Lal2g1513 416 SUPERFAMILY Translational machinery components 143 232 - -
Lal2g1513 416 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 232 414 IPR011263 GO:0003899|GO:0006351
Lal2g1513 416 CDD RNAP_alpha_NTD 232 416 - -
Lal2g1513 416 Pfam Ribosomal protein L14p/L23e 1 120 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lal2g1513 416 Hamap 30S ribosomal protein S11 [rpsK]. 132 261 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal2g1513 416 Gene3D Ribosomal protein L14 1 121 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lal2g1513 416 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 251 369 IPR036643 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1513 Lal-Chr2 15602487 15608195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1513 8 119 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 32.759 2.80e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1513 K03040 - han:110898696 333.569