Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1324 ATGGCTTCTCATCTTACCCATTCTAACCAGTATGTTTTGGCTATTGTAATTGCCATCATAGTTTTCACTCCAAAACTTACTTCTGCCAAGAAATCTAAGATAATTGGCTTGAAAATGAATGTAATTGATAAATGTTGGAGATCAGATCCTGAATGGAGAAAGCATCATCCACAACTTGCTACATGCTCTATGGGTTATGCTGGCAAGATGACAAATAACATTGGTGAAGACCTCGTCCATTATAAAGTTACTGATCCTAGTGATGACCCTGTAAACCCTAAACAAGGCACCTTAAGGTATGGTGCTTCTGTGATCCAAGGGAAAGTATGGATTACATTCCAAAGAGACATGGTTATTAGGTTAATGAGACCACTTCTCATTAGTAGTTTCACTACCATTGATGGTCGAGGAGTTAATGTCCATATTGCTCATAATGCATGCTTGATGATCTATAAGGCTACCAACATAATCATTCATGGCCTACGAATTCATCATTGCAAACCTCAAGCACCCGGGATGGTGATGGGTTCTAATGGAAAGGTTATGCCTTTAGGTCAAGTAGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGATCATAATACACTTTACAATTGCCAAGATGGTCTTCTTGATGTCACACGAGGTTCCACTAATGTGACTGTCTCTAACAATTGGTTCAGATTTCAAAACAAAGTTATGCTTTTGGGTCATGATGATGGATATATTAGAGATCATAAAATGAACGTTACAGTGGTGTACAACCATTTTGGACCTAATTGTAACCAACGCATGCCCAGGATCCGCCATGGATATGCACATGTAGTAAATAATATGTACTTGGGATGGTTGCAATATGCCATCGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTCATAGCACCAACTTCAGGGAGTAAGGAGTATCAGTCCTGGGATTCTCGCTTGAGCGATGGATTCTCGCCTGGGCGAGAAAGGCTCACCTGGGAGGGTGAAATCTTGGGCTATACTAGAGGATTCTCGCCTGAGCGAGGGTTTGCTCGCTTGAGCGAGAGTGGTCTCGCCTGGGTGAGAAAAGTGACATTTTGGACCTGTCGAGGTTGTAAGATCATCGCTTGA 1143 0.4156 MASHLTHSNQYVLAIVIAIIVFTPKLTSAKKSKIIGLKMNVIDKCWRSDPEWRKHHPQLATCSMGYAGKMTNNIGEDLVHYKVTDPSDDPVNPKQGTLRYGASVIQGKVWITFQRDMVIRLMRPLLISSFTTIDGRGVNVHIAHNACLMIYKATNIIIHGLRIHHCKPQAPGMVMGSNGKVMPLGQVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTNVTVSNNWFRFQNKVMLLGHDDGYIRDHKMNVTVVYNHFGPNCNQRMPRIRHGYAHVVNNMYLGWLQYAIGGSMEPSLKSEANLFIAPTSGSKEYQSWDSRLSDGFSPGRERLTWEGEILGYTRGFSPERGFARLSESGLAWVRKVTFWTCRGCKIIA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1324 380 SMART amb_all 116 313 IPR002022 -
Lal2g1324 380 PANTHER PECTATE LYASE 13 317 - -
Lal2g1324 380 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Lal2g1324 380 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Lal2g1324 380 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
Lal2g1324 380 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Lal2g1324 380 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Lal2g1324 380 Gene3D - 39 340 IPR012334 -
Lal2g1324 380 Pfam Pectate lyase 127 307 IPR002022 -
Lal2g1324 380 PANTHER PECTATE LYASE 18-RELATED 13 317 IPR045032 GO:0030570
Lal2g1324 380 SUPERFAMILY Pectin lyase-like 39 317 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1324 Lal-Chr2 10849254 10851166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1324 70 316 Polysaccharide Lyase AT5G09280 70.850 5.08e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1324 K01728 - gmx:100780437 547.74