Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1315 ACAATATCATACATCATGGCTTCTCATCTTACCCATTCTAACCAGTATGTTTTGGCTATTGTAATTGCCATCATAGTTTTCACTCCTAAACTTACTTCTGCCAAGAAATCTAAGATAATTGGCTTGAAAATGAATGTAATTGATAAATGTTGGAGATCAGATCCTGAATGGAGAAAGCATCGTCCACAACTTGCTACATGCTCTATGGGTTATGCTGGCAAGATGACAAATAACATTGGTGAAGACCTCGTCCATTATAAAGTTACTGATCCTAGTGATGACCCTATAAACCCTAAACAAGGCACCTTAAGGTATGGTGCTTCTGTGATCCAAGGGAAAGTATGGATTACATTCCAAAGAGACATGGTTATTAGGTTAATGAGACCACTTCTCATTAGTAGTTTCACTACCATTGATGGTCGAGGAGTTAATGTCCATATTGCTCATAATGCATGCTTGATGATCTATAAGGCTACCAACATAATCATTCATGGCCTACGAATTCATCATTGCAAACCTCAAGCACCCGGGATGGTGATGGGTTCTAATGGAAAGGTTATGCCTTTAGGTCAAGTAGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGATCATAATACACTTTACAATTGCCAAGATGGTCTTCTTGATGTCACACGAGGTTCCACTAATGTGACTGTCTCTAACAATTGGATCCGCCATGGATATGCACATGTAGTAAATAATATGTACTTGGGATGGTTGCAATATGCCATCGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTCATAGCACCAACTTCAGGGAGTAAGGAGGTTACATGGAGAAAAGTGGGTAACACAAATGGGAATAAATGGCAATTTCATTCGGTGAAAGACATTTTTGAAAATGGAGCATCCTTCAAGGCAACAAAAGGTGGATATGTTCCAAAGCCAAATTATAACCGGGACCAAGCTTTTAAAGTTGCTGATGCCAAATCTGTGAGATCATTGACAAGTTCATCAGGTGCATTACGATGCAGTAAAACCTCTATATGTTGA 1065 0.3906 TISYIMASHLTHSNQYVLAIVIAIIVFTPKLTSAKKSKIIGLKMNVIDKCWRSDPEWRKHRPQLATCSMGYAGKMTNNIGEDLVHYKVTDPSDDPINPKQGTLRYGASVIQGKVWITFQRDMVIRLMRPLLISSFTTIDGRGVNVHIAHNACLMIYKATNIIIHGLRIHHCKPQAPGMVMGSNGKVMPLGQVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTNVTVSNNWIRHGYAHVVNNMYLGWLQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRKVGNTNGNKWQFHSVKDIFENGASFKATKGGYVPKPNYNRDQAFKVADAKSVRSLTSSSGALRCSKTSIC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1315 354 Gene3D - 44 237 IPR012334 -
Lal2g1315 354 Gene3D - 238 347 IPR012334 -
Lal2g1315 354 SUPERFAMILY Pectin lyase-like 38 346 IPR011050 -
Lal2g1315 354 SMART amb_all 121 277 IPR002022 -
Lal2g1315 354 Pfam Pectate lyase 132 237 IPR002022 -
Lal2g1315 354 PRINTS Pollen allergen Amb family signature 92 117 IPR018082 -
Lal2g1315 354 PRINTS Pollen allergen Amb family signature 129 145 IPR018082 -
Lal2g1315 354 PRINTS Pollen allergen Amb family signature 193 214 IPR018082 -
Lal2g1315 354 PANTHER PECTATE LYASE 18 237 - -
Lal2g1315 354 PANTHER PECTATE LYASE 236 351 - -
Lal2g1315 354 PANTHER PECTATE LYASE 18-RELATED 236 351 IPR045032 GO:0030570
Lal2g1315 354 PANTHER PECTATE LYASE 18-RELATED 18 237 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1315 Lal-Chr2 10465442 10467376 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1315 75 281 Polysaccharide Lyase AT5G09280 57.661 2.73e-101 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1315 K01728 - gmx:100780437 560.451