Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1281 ATGTCTTGTTCAAAACGTTCAACGCCACTCCGGCGACGGACCAATGCCCCAAAACCTTCACAAAAGTCTCTGTGCCTCGACGACCTCGGCTGTGAAAAATGTGGGTCCGATGAGTCACCGGCCGAGCTGCTTTTGTGTGACAAATGCGACAAAGGTTACCACTTGTTCTGCCTCAGACCCATCCTTCCGTCCGTCCCAAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATTCCACTAATAAGATACCGATTTCTTTTCCTCTTGTTCAGACCAAAATCATTGACTTCTTTAAAATTCAACGATCTTTCGATGCACCCGAAATATCAAATCAAGATACTCGGAAGAAGCGAAAGAGGAGTAGCAGCTTAGTGGTATCGAAAAAGAGAAGGAAACTGCTGCCATACACCCCGACCGATGATCCGAAGAGGAGATTAGAACAGATGGCATCATTAGCAACTGCACTGACAGCAACCAAAACAAAATTCAGCAATCAACTTACTTACATGCCTCGAATGGCACCTAGGTCTGCTAATTCTCCCGATTTGGAGCGTGGTGGAATGCAGACCTTATCAAAAGAAGATACCGAGACATTAAACTTGTGCAAAAGTATGATGGAAAGAGGAGAGTGCCCACCCCTCAAGGTTGTTTTTGATCCTATAGAAGGGTTTACTGTTGAAGCTGATGGACTCATAAGAGATCTAACAATAATCACAGAATATGTTGGAGATGTAGATTTTCTAAAGAATAGGGAAAATGATGATGGGGATAGCATGATGACACTACTTTCAGCTTCTGATCCTTCACGAATGCTTGTCATATGTCCAGATAAACGTAGCAACATTGCACGTTTCATTAATGGCATCAACAATCACACACCGGAAGGAAAAAAGAAGCAGAACTTAAAATGTGTGAGATTCGACGTGAATGGTGAATGTCGGGCTCTTCTAATTGCTAATAGAGATATAACAAAGGGGGAAAGGTTGTACTATAACTACAATGGATACGAACACGAATATCCAACTGAACATTTTGTTTAA 1038 0.4277 MSCSKRSTPLRRRTNAPKPSQKSLCLDDLGCEKCGSDESPAELLLCDKCDKGYHLFCLRPILPSVPKGSWFCPSCSNSTNKIPISFPLVQTKIIDFFKIQRSFDAPEISNQDTRKKRKRSSSLVVSKKRRKLLPYTPTDDPKRRLEQMASLATALTATKTKFSNQLTYMPRMAPRSANSPDLERGGMQTLSKEDTETLNLCKSMMERGECPPLKVVFDPIEGFTVEADGLIRDLTIITEYVGDVDFLKNRENDDGDSMMTLLSASDPSRMLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRALLIANRDITKGERLYYNYNGYEHEYPTEHFV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1281 345 SMART PHD_3 30 76 IPR001965 -
Lal2g1281 345 Pfam PHD-finger 31 77 IPR019787 -
Lal2g1281 345 PANTHER HISTONE ACETYLTRANSFERASE 10 342 - -
Lal2g1281 345 SUPERFAMILY SET domain 203 333 IPR046341 -
Lal2g1281 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Lal2g1281 345 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 10 342 - -
Lal2g1281 345 Gene3D SET domain 117 345 IPR046341 -
Lal2g1281 345 CDD SET_ATXR5_6-like 208 345 - -
Lal2g1281 345 ProSiteProfiles Zinc finger PHD-type profile. 28 78 IPR019787 -
Lal2g1281 345 ProSiteProfiles SET domain profile. 211 333 IPR001214 GO:0005515
Lal2g1281 345 CDD PHD_RSF1 31 75 - -
Lal2g1281 345 MobiDBLite consensus disorder prediction 1 21 - -
Lal2g1281 345 ProSitePatterns Zinc finger PHD-type signature. 31 75 IPR019786 -
Lal2g1281 345 SUPERFAMILY FYVE/PHD zinc finger 18 82 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1281 Lal-Chr2 10033386 10036793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1281 26 75 C2H2 Transcription Factor Family AT3G01460 48.000 4.70e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal2g1281 PHD 9.2e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1281 K24406 - gmx:100775247 533.487