Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1271 ATGAACAATAGAGGGAGGTATCCACCCGGGATGGGGTTAGGGAGAGGCGGCGGCGGCGGTGGTGGTTTGAACCCTAACCCTGGGTTTCAACCAAGGCCACCACAACAACAGTATGTACAGAGGCACATAATGCAGCAACCGCAACAGCAACAACAGTATCAGCAGCAGCAACAGCAACAGCAACAAAAGTATCAGCAGCAGCAACAGCAGCAATATCAGCAGCAACAACAACAGCCACAACAGTGGTTGAGAAGGACCCAATTGGGTGGTGGTACTGACACCAATGTGGTTGAGGAAGTTGAGAAGACTGTACAGTCTGAAGCCATCGACCAAAGTTCACAAGATTGGAAGACGGGACTAAAGATTCCAGCTGCTGATACACGCTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATACGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAGAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAGAATGGAACTGGTAAAACAGCTGCATTTTGTATTCCAGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATACTTGTTCCAACACGAGAATTGGCCTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGGAAGCATTTGAAAATCCAAGTTATGGTTACAACTGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCAGTTCATTTACTAGTTGGAACTCCGGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCGTTCTGAAAGATTGCTCTATTCTTGCTATGGACGAGGCTGATAAGCTTCTGTCCCCGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTGGGAACCGTCAAATACTTATGTTTTCAGCAACCTTTCCTGTTACTGTAAAGGACTTCTCAGATAGACACCTTCGTAAGCCATATATCATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAGTTTTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTCTTCTCTAAGCTGCAAATAAACCAATCAATCATCTTCTGCAACTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAACAGAGTATTTCATGATTTCCGCAATGGGGCATGCAGGAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTCATTAATTTTGATTTTCCCAAGAACTCGGAAACTTATCTTCACCGGGTTGGTCGTTCAGGGAGGTTTGGACACCTTGGTTTAGCAGTGAACTTGATCACGTATGAGGACCGCTTCAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAGGCAATATATTGCCAGTGA 1545 0.4278 MNNRGRYPPGMGLGRGGGGGGGLNPNPGFQPRPPQQQYVQRHIMQQPQQQQQYQQQQQQQQQKYQQQQQQQYQQQQQQPQQWLRRTQLGGGTDTNVVEEVEKTVQSEAIDQSSQDWKTGLKIPAADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSILAMDEADKLLSPEFQPSIEQLIQFLPGNRQILMFSATFPVTVKDFSDRHLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1271 514 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 3 514 - -
Lal2g1271 514 CDD DEADc_DDX6 142 342 - -
Lal2g1271 514 SMART ultradead3 159 355 IPR014001 -
Lal2g1271 514 SMART helicmild6 391 472 IPR001650 -
Lal2g1271 514 Pfam DEAD/DEAH box helicase 165 329 IPR011545 GO:0003676|GO:0005524
Lal2g1271 514 Gene3D - 345 514 IPR027417 -
Lal2g1271 514 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Lal2g1271 514 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 3 514 - -
Lal2g1271 514 CDD SF2_C_DEAD 352 481 - -
Lal2g1271 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 494 IPR027417 -
Lal2g1271 514 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 341 IPR014001 -
Lal2g1271 514 Coils Coil 50 70 - -
Lal2g1271 514 Pfam Helicase conserved C-terminal domain 366 472 IPR001650 -
Lal2g1271 514 Gene3D - 99 344 IPR027417 -
Lal2g1271 514 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 511 IPR001650 -
Lal2g1271 514 MobiDBLite consensus disorder prediction 1 66 - -
Lal2g1271 514 MobiDBLite consensus disorder prediction 33 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1271 Lal-Chr2 9957847 9965123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1271 140 511 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 4.73e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1271 K12614 - tcc:18614173 843.573