Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1187 ATGAAGGATGAATTTCTTGGAGAAAGTTATGAAGGGGTTGTTCCCCAACCAATGGAGGGGCTCCATGAAAGTGGTCCTCCACCATTCCTCACAAAAACATATGACATTGTTGAAGATGTTTCAACTAATCAGATTATTTCATGGAGCAAAGGGAACAACAGCTTCATTGTTTGGGATCACCAAGCATTTTCCATCAGTCTTCTCCCTAGATACTTCAAGCACAACAACTTCTCTAGCTTTGTTAGACAGCTTAATACCTATGGGTTTAGAAAGGTTGACCCAGACAAGTGGGAGTTTGCTAATGAAGGTTTTGTAAGAGGACAAAGGCATCTTTTGAAAAATATAAGGAGAAGGAAAACAACTCAACCTCATACTCCACAACATGCACAAGACCCTTGTGTTGAAGTTGGGAAGTTTGGATTAGACTTTGAAATTGATAGGTTGAAGCGTGACAAACAAGTTCTAATGGTAGAGGTTGTGAAACTCAGACAACAGCATCAGAACACAAGAAACACCCTTCAAGAAATGGAAAACAGGCTTCAAAACACTGAGCAGAAACAGCAACATATGATGAAATTCTTGGCTAGGGCAATGCAGAACCCTAACTTCATGCAACAATGGGTTCAACAAAAGGAGATAGAAGAAGCTATTTCCAAGAAAAGAAGGCTTAATATTGATCAAGGAATGACTAGTAATATTGTTAATGTTGAAGTAGATCATGAATTAGGTTATGTTCATGAAAAGTGCTCAGTTTTTGTTAAACTTGAACAGAAAGAGTACAATGAGATATTAGAGCTTGAGGTTTCTGACCTGAACCTTGTTATGGATTTGAAGGAACAAAATGGAAGCCAAAGGAACGTAGAGGAGAAGGGAATTGAACTTGAAAGTATAGATAAGGGCATTGATGAAGCATTTTGGGAAGAGTTTTTGAATGAGGGCACTCAAGAAAATCTTGTAGGATTTAATAATGAAGGTGATGAAGATATAGATGTGTTGGTTAAGGAATTTGATTATTTAGCCTAA 1023 0.3763 MKDEFLGESYEGVVPQPMEGLHESGPPPFLTKTYDIVEDVSTNQIISWSKGNNSFIVWDHQAFSISLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFVRGQRHLLKNIRRRKTTQPHTPQHAQDPCVEVGKFGLDFEIDRLKRDKQVLMVEVVKLRQQHQNTRNTLQEMENRLQNTEQKQQHMMKFLARAMQNPNFMQQWVQQKEIEEAISKKRRLNIDQGMTSNIVNVEVDHELGYVHEKCSVFVKLEQKEYNEILELEVSDLNLVMDLKEQNGSQRNVEEKGIELESIDKGIDEAFWEEFLNEGTQENLVGFNNEGDEDIDVLVKEFDYLA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1187 340 Coils Coil 145 193 - -
Lal2g1187 340 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g1187 340 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g1187 340 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g1187 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 330 IPR027725 -
Lal2g1187 340 ProSitePatterns HSF-type DNA-binding domain signature. 68 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g1187 340 Gene3D - 21 120 IPR036388 -
Lal2g1187 340 Pfam HSF-type DNA-binding 29 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g1187 340 SMART hsfneu3 25 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g1187 340 SUPERFAMILY "Winged helix" DNA-binding domain 24 118 IPR036390 -
Lal2g1187 340 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 13 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1187 Lal-Chr2 8881430 8884102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1187 15 340 HSF AT3G22830 54.144 2.79e-118 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal2g1187 HSF_DNA-bind 1.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1187 K09419 - gmx:100809515 422.935