Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1155 ATGGATTGTTCCTCCATCCACCATTCATCAAACTCAGATTTTTCCTCAGAATCTTCATTAGGGTCACCAGATTTAACCTCCTTGAATATCAACAATGATCACTACCTTCCCTTCAATGAGAATGACCCAGATGAGATGCTTCTCTATGGCATGATCACCTCCCAACAACAACTACAACCATTTGGCACATGCATAGTCAACAAGGAAGATGAGGTGAGCTCAAAGGAGAAAAACAATGGTGGTGGTGGTGACAATAACAACAGCACAATAATGAATAAGGAGAAGGCCTACCGCGGCGTCCGGCGGCGGCCGTGGGGGAAGTTTGCGGCTGAGATAAGGGATTCCACAAGGCATGGGATTAGGGTTTGGCTGGGAACATTTGATAGTGCAGAAGCAGCAGCACTAGCTTATGATCAAGCTGCTTTTTCAATGAAGGGTTCTGCAGCAATACTCAATTTTTCTGTTGAAAGGGTAAAAGAGTCACTTAAGGAAATCATGAACAATAATTGTGAAGATGATTATGATGATTATGGTGAGTGTTCTCCTGTGGTTGCTTTGAAGAAAAAGCACTCCATGAGAAAGAAAATGGGAATCAAGAAGAAAGAGACAAGTGTTAGAAATAGGGTTGTCTTTGAAGATTTAGGTGCTGAATATTTGGAACAATTATTGATGTCATCTGAGAAACATGGTAATTGGTGA 699 0.4163 MDCSSIHHSSNSDFSSESSLGSPDLTSLNINNDHYLPFNENDPDEMLLYGMITSQQQLQPFGTCIVNKEDEVSSKEKNNGGGGDNNNSTIMNKEKAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMKGSAAILNFSVERVKESLKEIMNNNCEDDYDDYGECSPVVALKKKHSMRKKMGIKKKETSVRNRVVFEDLGAEYLEQLLMSSEKHGNW 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1155 232 MobiDBLite consensus disorder prediction 71 94 - -
Lal2g1155 232 MobiDBLite consensus disorder prediction 78 93 - -
Lal2g1155 232 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Lal2g1155 232 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Lal2g1155 232 CDD AP2 97 153 IPR001471 GO:0003700|GO:0006355
Lal2g1155 232 Gene3D AP2/ERF domain 95 156 IPR036955 GO:0003700|GO:0006355
Lal2g1155 232 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Lal2g1155 232 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Lal2g1155 232 MobiDBLite consensus disorder prediction 1 22 - -
Lal2g1155 232 PANTHER DNA-BINDING DOMAIN 26 225 IPR044808 GO:0003700|GO:0009873
Lal2g1155 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 26 225 - -
Lal2g1155 232 ProSiteProfiles AP2/ERF domain profile. 96 154 IPR001471 GO:0003700|GO:0006355
Lal2g1155 232 SMART rav1_2 96 160 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1155 Lal-Chr2 8349234 8349932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1155 8 232 AP2-EREBP Transcription Factor Family AT3G23240 53.846 6.13e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal2g1155 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1155 K14516 - gmx:100804481 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1155 2 8349234 8349932 Lal9g1098 9 9071996 9072676 LSH