Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1150 ATGGCGGCGTATTCCGCTTCAGAAGATGGAACGTTTCAGAAAAAAGATGACGTTGTTTACTTTAACGGCCAACCTGTCCGCATGGCCATCCCCTTAACGCTGATTCGCTCCGTCACAAGTAACGGCGGTGTTCGCGTTGTTGCACCGCCGCTGGTCGAAGTTAAAGAAGAGCCAAAAGAAGTAACCGATTCCGAAGTAGTAATGGAGACTCAGATGAAAGAGCCAAAAACAGAACAAGAGTGTTTTGAATTTAAAGACACTAAAACGCTGTCGTTTGATCATTTTCTCAAGTTCACTAACACGAAAGTTATGTCTCACGACGAGTCGTTAAAATCAATGCTTCCTGTGAAAGAAGAACGAACCGAGTGCATTGAACCGGAAGAGAAGAAACCGGTTTTTGTTGAAACGCCGTCGTTTTCAGAAGACTCTCTGAAATCAACTGCGGCACAAGGAGTTGGTGCTAATGCTGTTGAATCTAAGAAGTGTGGTGATGAAGAAGCTGAGATTCTTAAGGTGAATCCGTTTGCAGGTTTGAATCTGAAGAGGCGTTCGAAGGCGAAGGTGGCTGAGGAGAAGAAGGAGAAAGTAGAAGTGAAGATTCTAAATGTGGAGGATGGTGAGTTTCCGAGTGAGCCGGGGTGGTTATTGATAGGAAGGAAAGTGGAACTCGCGCTTGCGACTGCGAAAGGAGTGAGGAAATTGGTTGATAATGAGATTGTTCATTTCAATTTCACTCTTCCATACAAGTCCAAATCACAGTGGATTGTTCGCATTTCAACAAAGCGTTCTGGAGAGGTTGGGAGGCTTCCTATGGAATGGGCAAACACGGTTGTTCCACTTGTGCAGTCTGGAAAGGTTAAGGTTCGAGCGAGATGCATATCTGCCCCTTACAGCCTGCAAATGATGCAAGAAATCATGTTGCTAGTAAGTTTTTACACTCACCATTCTATACTCACACAAAGTGTTGATACATCTTGGAACCTAGATGCTACAAACATCAACCCTAGCATTTATCCACTGCTTACACTGTTCAAAATGCTTGAGATTAAGCCGTCTCAAAAGGCTGATTTTGCCCCAGAGGATATTGGTTCTAGGAAGCACTTGCTTAATCCAAAGCTTGATCCTGATGAGGTTGCAGCATTACCTTTAATAAAGAGAAGAAAGGGTTGTGAGCAGCTACCAGAACCAAAAGATGATGATGAACAAGCTCTTTCAGAGTCTGCTTTGAATAAGCTTGTTGGAGCTGCAGAAATCTATGAGCTGGAGGAGAAGGATGCCCCAAGCACACTGACTTGTTGTCTAAAGCCTTACCAGAAACAAGCTCTCTATTGGATGTCAGAAATTGAGAAGGGAATGAATGTTGAGAGGGATGCAGAAAATCTCCATCCTTGCTGGTCAGCCTACAATATATGTGATGGAAGGACAATTTATGTGAACATCTTCACAGGGGAAGCCACAACAAGATTTCCAAGAGCAACTCAGATGGCAAGAGGAGGAATTCTAGCAGATGCAATGGGACTTGGAAAAACTGTTATGACAATTGCTCTGATTCTTAGTAACCTAAGCAAGGGGAATGATGCAGATAATGCAACTGATAATCTTGCTACAAATAAGAGGAATGTGAACACCACATACAGAGTGAACGGTGGCACTCTTATTGTTTGTCCCATGGCATTGCTAGGTCAGTGGAAGGATGAGCTTGAAACACATTCAAAGGCGGGTAGTATAACAATATTTGTTCACTATGGTGGGGGTAGAACCAATAATCCCCAGTTGCTCTCAGATCATGATGTTGTCTTAACTACATATGGAGTCTTACAATCTGCATTTAAAAGTGATGGAGAGAATAGCATTTACCACAGGGTCAATTGGTACAGGGTGGTGTTAGATGAAGCTCATCATATCAAAGGCCATAAATTACAGATTTCCCAGGCTGCTTTTGCTTTGTCGTCACACTGCCGCTGGTGCCTAACTGGAACCCCTATTCAGAATAGTTTAGAAGACTTATTCAGCCTCTTGTGCTTCTTGCGTGTTGAGCCTTGGTGCAACTGGGCATGGTGGCATAAGTTGATTCAAAGGCCTCATGAGAATAATGATCCAAGGGCCCTGAAATTGGTCAAGGGCATTTTGAGGACTATAATGTTAAGAAGAACGAAGGAAACAAAGGACAAAGAAGGAAGGCCCATACTAGTCCTTCCACCAACTGATATTCAATTAATCGAGTGTGAACAGTCAGAATCTGAACGTGACTTCTATGATGCCCTCTTTATGAGATCTAAAGTTCAGTTTGATGAGTATGTTGAACAAAGAAATGTTCTTAACCATTATGCCAATATCCTGGACCTACTGATGCAGCTGAGACGTTGTTGTAACCATCCATTTTTGGCTTTGTGTGGAAAAGATTCACAAAAATATGCTGACTTGAGCAGATTCGCACGAAGATTCCTGCAGTCTAACACTAATTCGTCCCACATGTGCGTCCAAGATGATCCACAGCAAAATGCAGATTTGAACAAACTGGCAACTAAATTCCTCCTTAAGACTGATTCTGCTCCAAATGCAGTCCAATCTCGTGCATACATTGATGGGGTAATGGATAATATTCAAAATGGTGAAAACATAGAATGCCCTATTTGTTTTGAGTCACCAGATGATCCTGTGTTTACACCATGTGCACATAGCTTGTGTAAGGAATGTCTATTCAATTTCTGGGGGACCTCAGTGGGTGGTAAATGTCCGATCTGTCGTCAAAAGCTCCAGAAAAGTGATCTGATTACTTGCCCATCTTTAAGTCCGTTTAAGGTTGATGTTGAGAACAATGTGACAGAGTCTTCAAAGGTTTCAAAGCTATTGGATTACTTGCAATCCATTGAGAGGTCACACTTTGGTGAAAAAAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTACTGGAGAATCCATTGAAAATTAGAGGCATTGCTTATTTAAGATTTGATGGGAAGTTGACTCAGAAACAGAGGGAGAAAGTTCTGAATGAATTTAACGAGACAAAAGAGAAAAGGGTTTTGTTGATGTCACTAAAAGCCGGTGGCGTGGGTTTGAACTTAACTGCTGCCTCACATGTTTTCATTATGGACCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGTATTGGACAAAAGCGTAGAGTTATTGTTAGAAGATTCATTGTCAAGGACACAGTGGAAGATCGTTTGCAACAAGTGCAAGCAAAGAAACAAAGAATGATATCTGGTGCCCTCACAGATGATGAGGTTCGGTCGTCAAGGATTCAAGACCTGAAAATGCTATTCACATGA 3342 0.4219 MAAYSASEDGTFQKKDDVVYFNGQPVRMAIPLTLIRSVTSNGGVRVVAPPLVEVKEEPKEVTDSEVVMETQMKEPKTEQECFEFKDTKTLSFDHFLKFTNTKVMSHDESLKSMLPVKEERTECIEPEEKKPVFVETPSFSEDSLKSTAAQGVGANAVESKKCGDEEAEILKVNPFAGLNLKRRSKAKVAEEKKEKVEVKILNVEDGEFPSEPGWLLIGRKVELALATAKGVRKLVDNEIVHFNFTLPYKSKSQWIVRISTKRSGEVGRLPMEWANTVVPLVQSGKVKVRARCISAPYSLQMMQEIMLLVSFYTHHSILTQSVDTSWNLDATNINPSIYPLLTLFKMLEIKPSQKADFAPEDIGSRKHLLNPKLDPDEVAALPLIKRRKGCEQLPEPKDDDEQALSESALNKLVGAAEIYELEEKDAPSTLTCCLKPYQKQALYWMSEIEKGMNVERDAENLHPCWSAYNICDGRTIYVNIFTGEATTRFPRATQMARGGILADAMGLGKTVMTIALILSNLSKGNDADNATDNLATNKRNVNTTYRVNGGTLIVCPMALLGQWKDELETHSKAGSITIFVHYGGGRTNNPQLLSDHDVVLTTYGVLQSAFKSDGENSIYHRVNWYRVVLDEAHHIKGHKLQISQAAFALSSHCRWCLTGTPIQNSLEDLFSLLCFLRVEPWCNWAWWHKLIQRPHENNDPRALKLVKGILRTIMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFMRSKVQFDEYVEQRNVLNHYANILDLLMQLRRCCNHPFLALCGKDSQKYADLSRFARRFLQSNTNSSHMCVQDDPQQNADLNKLATKFLLKTDSAPNAVQSRAYIDGVMDNIQNGENIECPICFESPDDPVFTPCAHSLCKECLFNFWGTSVGGKCPICRQKLQKSDLITCPSLSPFKVDVENNVTESSKVSKLLDYLQSIERSHFGEKSIVFSQWTSFFDLLENPLKIRGIAYLRFDGKLTQKQREKVLNEFNETKEKRVLLMSLKAGGVGLNLTAASHVFIMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKDTVEDRLQQVQAKKQRMISGALTDDEVRSSRIQDLKMLFT 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1150 1113 ProSiteProfiles Zinc finger RING-type profile. 876 916 IPR001841 -
Lal2g1150 1113 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 949 1109 IPR001650 -
Lal2g1150 1113 Pfam SNF2-related domain 437 794 IPR000330 GO:0005524|GO:0140658
Lal2g1150 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 717 IPR027417 -
Lal2g1150 1113 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 490 679 IPR014001 -
Lal2g1150 1113 Gene3D - 485 718 IPR038718 -
Lal2g1150 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 730 1103 IPR027417 -
Lal2g1150 1113 Pfam Zinc finger, C3HC4 type (RING finger) 874 921 - -
Lal2g1150 1113 Pfam Helicase conserved C-terminal domain 948 1060 IPR001650 -
Lal2g1150 1113 SMART helicmild6 977 1060 IPR001650 -
Lal2g1150 1113 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 380 1112 - -
Lal2g1150 1113 Gene3D - 733 1113 IPR027417 -
Lal2g1150 1113 SUPERFAMILY RING/U-box 871 926 - -
Lal2g1150 1113 SMART ultradead3 430 696 IPR014001 -
Lal2g1150 1113 CDD SF2_C_SNF 932 1071 - -
Lal2g1150 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 868 924 IPR013083 -
Lal2g1150 1113 PANTHER DNA REPAIR PROTEIN RAD5B 380 1112 - -
Lal2g1150 1113 ProSitePatterns Zinc finger RING-type signature. 891 900 IPR017907 -
Lal2g1150 1113 CDD DEXDc_SHPRH-like 434 717 - -
Lal2g1150 1113 Pfam HIRAN domain 227 307 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lal2g1150 1113 SMART ring_2 876 915 IPR001841 -
Lal2g1150 1113 SMART HIRAN_2 217 313 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1150 Lal-Chr2 8302213 8308035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1150 192 1112 RAD5 or RAD16-like Gene Family AT5G43530 62.701 0.0 1195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal2g1150 SNF2_N 3.4e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1150 K15505 - gmx:100806677 1430.23