Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1137 ATGGATTCGGATCAGGGGAAGCTTTTCATTGGTGGGATTTCATGGGACACTAACGAGGACAAGCTTAAGGACTATTTCGGAAACTACGGTGTTGTCTCTCATGCTTCTGTTATGAGAGATAAGAACACAGGAAAACCTCGTGGTTTTGCCTTTGTTGTTTTTTCAGATCCATCTATTGTTGATAGGGTTCTTGAAGATACCCACGTTATTGATGGAAGAACGGTTGATGCCAAGAGAGCCTTCTCAAGAGATGATCAACAGATTTCTGTTAATTCTAGAACTGGTAATTCCAACTCTGGTAGGAGTTCTGGAAATGGTGGAAATACCAGGAGCAAAAAAATATTTGTTGGAGGGTTACCTCCCACCCTGACTGAAGAACAATTTCGTGAATACTTTGAGGCTTATGGCCAAGTAACTGATGTAGTAGTCATGTATGATCAGAATACTGGACGACCTCGAGGATTTGGGTTTATTTCTTTTGATAATGAAGACACAGTTGATAGAGTTTTGCACAAGACATTTCATGAATTAAATGGTAAAAATGTGGAGGTAAAGCGTGCACTTCCTAAGGATGCGAATCCTGGTACAAGTAACCACATAGGTGGTGCTGGAGTTGGCGGGTATCAGGGGTATGGGGCTTCTGGTGGCAACCAAAATGCATTTGATGGTCGGACAGATTCAAGTAGGTATGTGCAGCATCAAAATACTGCAAGTGGATTCCCACCGTATGGTTCTTCTGGGTATAGTGCTCCTGGGTATGGATATGGTGCAGCTAACAATGGCATTGGTTATGGTGCATATGGAGGATATAGTGGTTCCACTGCTGGGTATGGTGGACCTGCTGGTGCATCATATGGGAACCCAAGTGTTCCTAATGCTGCTTATGCTGGTGGTCCTCCAGGTGGCCCGAGGAGTTCATGGTCTGGTCAGGTTCCCTCTGGTTATGGGTCTGCAGGGTATGGTGGTACTGGAACTGGTAGTGGTGGCCCTGGTTCAGCACCCGCAGGTCAATCCCCGAGCACAGTTGCTGGATATGGGAATCAAGGTTATGGATACGGTGGGTATAGTGGAAGTGATAGTTCTTATGGGAATTCGGGTGCTTATGGTGCTGTTGGAGGGCGTTCCGGGAGTGCCCCAAATAGTGAGCTACAAGGCAGTGGTGGCCACTATATGGGAAGTGGCTATGGCGATCCAAATGGAAATTCAGGGTATGGAAATTATGGGACGCCTCAGGGAAATGGTGCTGCCCATGCTGGGCAAGGTGGTTATGGTGGTGGCTATGGAGGTTCACAGTCCCGACAAGTCCAACAGCAATAG 1317 0.4677 MDSDQGKLFIGGISWDTNEDKLKDYFGNYGVVSHASVMRDKNTGKPRGFAFVVFSDPSIVDRVLEDTHVIDGRTVDAKRAFSRDDQQISVNSRTGNSNSGRSSGNGGNTRSKKIFVGGLPPTLTEEQFREYFEAYGQVTDVVVMYDQNTGRPRGFGFISFDNEDTVDRVLHKTFHELNGKNVEVKRALPKDANPGTSNHIGGAGVGGYQGYGASGGNQNAFDGRTDSSRYVQHQNTASGFPPYGSSGYSAPGYGYGAANNGIGYGAYGGYSGSTAGYGGPAGASYGNPSVPNAAYAGGPPGGPRSSWSGQVPSGYGSAGYGGTGTGSGGPGSAPAGQSPSTVAGYGNQGYGYGGYSGSDSSYGNSGAYGAVGGRSGSAPNSELQGSGGHYMGSGYGDPNGNSGYGNYGTPQGNGAAHAGQGGYGGGYGGSQSRQVQQQ 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1137 438 MobiDBLite consensus disorder prediction 84 110 - -
Lal2g1137 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Lal2g1137 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lal2g1137 438 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal2g1137 438 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lal2g1137 438 MobiDBLite consensus disorder prediction 296 340 - -
Lal2g1137 438 Gene3D - 86 208 IPR012677 -
Lal2g1137 438 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Lal2g1137 438 MobiDBLite consensus disorder prediction 373 438 - -
Lal2g1137 438 Gene3D - 4 85 IPR012677 -
Lal2g1137 438 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 436 - -
Lal2g1137 438 MobiDBLite consensus disorder prediction 81 116 - -
Lal2g1137 438 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Lal2g1137 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lal2g1137 438 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lal2g1137 438 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lal2g1137 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 95 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1137 Lal-Chr2 8158024 8163374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1137 8 188 Eukaryotic Initiation Factors Gene Family AT2G23350 23.656 1.53e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1137 K14411 - gmx:100811267 459.914