Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1108 ATGGAGGCCATTGGTTCTGTGGATGATCTATTAGATTTCTCATTAGGCATGGGTGAGGAAGACGATGACGAGGACAAAAACCGGAAAGCCTTTCTTGAACTTAACCCAAAATGCAGTGATCCACCATCCTTAAGCCCATTGGACATGAATGACCCTAGCCCTCCATTTTCTGAGTGTGCAGAAGAAGAGCTTGAATGGCTATCCAACAGAGATGCATTTCCTTCGGTTGAAACATTTGTTGACATAACTTCTATTCAACCCACCTTATCAAAGCACCAGACAGGTTCAATGCTTGAACACAGCACAAGCAGTAGCAACAGTAATAACAGCACTAACAGCATTAGCCTCTTAACTGGCTATGATAACCTGAAGGTCCCTGTCCGTGCACGGAGCAAGTCTCGCAGTAGGCGTCTCCCTGGCAACTCTGGCATCTCTACCCAGCATTTCTGGACGAGACAGCGAAGGAAGGAAAATGCCAAAGCAGAAGTGATAACAATCCCAACCGCTGGGAGGAAATGTCAGCACTGTGGAGCCGAAAAAACTCCGCAATGGCGTGCTGGCCCCCTTGGGCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGGCGTCTTGTGCCTGAGTACCGCCCTGCAAGTAGCCCATCTTTTCGTAGTGACTTGCATTCAAATTCCCATAGGAAGGTAATGGAGATGAGGAAGCAGAAGCAAATTGGAATGGCTTGA 732 0.474 MEAIGSVDDLLDFSLGMGEEDDDEDKNRKAFLELNPKCSDPPSLSPLDMNDPSPPFSECAEEELEWLSNRDAFPSVETFVDITSIQPTLSKHQTGSMLEHSTSSSNSNNSTNSISLLTGYDNLKVPVRARSKSRSRRLPGNSGISTQHFWTRQRRKENAKAEVITIPTAGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPSFRSDLHSNSHRKVMEMRKQKQIGMA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1108 243 MobiDBLite consensus disorder prediction 1 57 - -
Lal2g1108 243 PANTHER GATA TRANSCRIPTION FACTOR 1 7 239 - -
Lal2g1108 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 231 - -
Lal2g1108 243 SMART GATA_3 167 217 IPR000679 GO:0006355|GO:0043565
Lal2g1108 243 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Lal2g1108 243 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Lal2g1108 243 MobiDBLite consensus disorder prediction 91 113 - -
Lal2g1108 243 CDD ZnF_GATA 172 220 IPR000679 GO:0006355|GO:0043565
Lal2g1108 243 PANTHER GATA TRANSCRIPTION FACTOR 7 239 - -
Lal2g1108 243 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Lal2g1108 243 Gene3D - 168 239 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1108 Lal-Chr2 7916277 7920449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1108 61 241 C2C2-Gata Transcription Factor Family AT3G24050 46.226 1.16e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal2g1108 GATA 8.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1108 - - gmx:100784527 320.087