Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1103 ATGGCGGCAATTTCTCAGAAATTTTTCTTCATCAATGCCTACTTCGTGTTCTTCTTCTTGCTTCTCATTGGAGACCTCAGGAATGTTGAAGTTGAAGCACACAGGTTACAGAGCTTGAACAACTCATCAATGGCGGCAAGGGCAAAAGAGGCAGATGAATTAAACGAGCGTGCTGCTGTTGCTGACCCAGAGGAAGTGGTTTCTATGGTTTCCATGAGCATTAAGAATAGCACAGAAAGGAGGAAGCTGGGATTTTTCTCTTGTGGAACTGGTAACCCGATCGATGATTGTTGGCGCTGTGACCAAAACTGGCTAAGCAACAGGAAGCGACTAGCGGATTGTGGCATTGGTTTTGGCCGAAATGCGATCGGTGGTCGCGATGGGAGGTTATACATTGTGACTGACCCCAAAGATGATGACCCTGTTAACCCAAGGCCGGGCACTTTGCGCTATGCTGTTATCCAAGATGAGCCACTATGGATTGTGTTCCAAAGGGACATGGTTATACAATTGAAGCAGGAACTTATCATGAACAGCTTCAAGACTATTGATGGGAGAGGTGCAAATGTGCACATTGCTAATGGAGCATGCATCACTATTCAGTATGTTACTAATATTATTATTCATGGCTTGCATATCCATGATTGCAAACCCACTGGAAATGCAATGGTGAGGAGTTCCCCTTCACACTTTGGATGGAGAACAATGGCTGATGGAGATGCAATCTCAATATTTGGGTCAAGTCACATTTGGGTTGATCACAATTCTCTGTCCAATTGTGCTGATGGCCTTGTTGATGCTATCATGGGATCAACAGCCATAACAATTTCTAACAACCACCTTACCCACCACAATGAGGTTATTCTGTTGGGCCACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTGACCATAGCATACAACCATTTTGGAGAGGGACTTATTCAGAGAATGCCAAGATGTAGACATGGATATTTTCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGAAATAGATACAATGCCCCAGTTAACCCTTTTGCAAAGGAGGTGACTAAGAGAGTAGAAACAGCTGCAAGCCAGTGGAAGGGTTGGAATTGGAGATCAGAGGGAGATTTGTTGCTGAATGGTGCTTATTTCACACCATCTGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCTAGCTTAGGAGCTAAATCTTCTTCTATGGTTGGATCCATGACTTCTAATGCTGGTGCATTAGGCTGCCGCAAAGGACAACAATGCTAA 1323 0.4482 MAAISQKFFFINAYFVFFFLLLIGDLRNVEVEAHRLQSLNNSSMAARAKEADELNERAAVADPEEVVSMVSMSIKNSTERRKLGFFSCGTGNPIDDCWRCDQNWLSNRKRLADCGIGFGRNAIGGRDGRLYIVTDPKDDDPVNPRPGTLRYAVIQDEPLWIVFQRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNIIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAIMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCRKGQQC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1103 440 Gene3D - 91 433 IPR012334 -
Lal2g1103 440 PANTHER PECTATE LYASE 48 437 - -
Lal2g1103 440 SUPERFAMILY Pectin lyase-like 67 434 IPR011050 -
Lal2g1103 440 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Lal2g1103 440 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Lal2g1103 440 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Lal2g1103 440 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Lal2g1103 440 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lal2g1103 440 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Lal2g1103 440 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Lal2g1103 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Lal2g1103 440 SMART amb_all 166 363 IPR002022 -
Lal2g1103 440 Pfam Pectate lyase 173 355 IPR002022 -
Lal2g1103 440 PANTHER PECTATE LYASE 18-RELATED 48 437 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1103 Lal-Chr2 7833521 7839024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1103 1 440 Polysaccharide Lyase AT4G13710 76.275 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1103 K01728 - gmx:100808253 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1103 2 7833521 7839024 Lal9g1037 9 8285558 8290421 LSH
Lal2g1103 2 7833521 7839024 Lal1g1007 1 7884841 7890257 LSH