Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1087 ATGATCATGGAGGTGAAGGATGAAGCTTTTCCCTTCTCCAAGTACTTGAATTCTCTCTGTTATAACCGTTGCATTCCTCTTTTTCTAGATATGGAGGATGCTACTCTGAGGTCACTTATACGAAGGTTGCTGTCACGACTCAATATGGAAACTGCCAATTTTTCGTCAAATCAAGGTTTATTTGGTTCATCTGCTAGTCTGGCTGAAAAGGAGGAAGTGGACTCTCGTTCAATCTATGTTGGCAATGTTGACTATGCATGCACTGCTCAAGAAATCCGTCGACATTTTGAACGATGTGGAATAGTGAATCGAGTGACAATTCCTGTGGACAAAAATGGTCATCCAAAAGGATTCGCCTATGTGGAGTTTGTTGATATCAATGATGTCCCAAATGCTCTCACAATGAATGAATCCTTATTGCATGGTCGTAAATTGAAGGTCTCTGCTAAGCGAACCAACATTCCTGGAATGAAACAGTATTTCCGAAGAACAGCTGGTTATAGATCTCGCAGGCCTTTCACACCTTCTCCATCCTATCGTTCAGGTGGACATGGAAGGGTTGCGACCTTTAGGCGTCCCATGCGATACAGGCCATACTAG 600 0.43 MIMEVKDEAFPFSKYLNSLCYNRCIPLFLDMEDATLRSLIRRLLSRLNMETANFSSNQGLFGSSASLAEKEEVDSRSIYVGNVDYACTAQEIRRHFERCGIVNRVTIPVDKNGHPKGFAYVEFVDINDVPNALTMNESLLHGRKLKVSAKRTNIPGMKQYFRRTAGYRSRRPFTPSPSYRSGGHGRVATFRRPMRYRPY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1087 199 SUPERFAMILY RNA-binding domain, RBD 67 181 IPR035979 GO:0003676
Lal2g1087 199 CDD RRM_II_PABPs 77 148 - -
Lal2g1087 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 146 IPR000504 GO:0003723
Lal2g1087 199 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 56 198 - -
Lal2g1087 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 56 198 - -
Lal2g1087 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 152 IPR000504 GO:0003723
Lal2g1087 199 Gene3D - 51 191 IPR012677 -
Lal2g1087 199 SMART rrm1_1 77 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1087 Lal-Chr2 7659990 7665432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1087 77 197 Eukaryotic Initiation Factors Gene Family AT2G36660 26.718 1.03e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1087 K14396 - gmx:100527545 203.371