Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1083 ATGGCTATGTTTGATCTCAATTATGACATTATCCATATTGATAGTAGCTCAACCTGTGCTAAAGAGTTGGTGCAACTTCAAAGTTTTCCATCCAAAATATCACATTCTGGGGCATCCAAATCCTCAGTTGTGATTAATCCTGTGGAGGAAGATGCCTCAAACAATTCTTCACCCTTCATTTTTGATGTAATGAAGAAAGGAAGAGATGGCAATGAAAGGAACAAGGGAGTGGAAAACATAGCACAAGAGCAAGAGAGAGTTACTATGACCCTTTTCCCTATGAGTGCAGATAGAGGAGGAAGAGTTTCTGATATGAACAAGAGGAAAACTGAATGGTTGAACCTGTCCTTTGCTGAACATAATGGACAAAATGAACTGAAAACCTTGCATCAGAAGCAACCTCAAATCAAGAAAGGAAGGAGAGGACCAAGGTCTAGAAGCTCACAGTTCCGGGGTGTTACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTTTATTTGGGTGGATTTGACACTGCTCAAGCTGCAGCAAGAGCATATGATAAGGCTGCAATTAAGTTTCGTGGAGTTGATGCAGATATAAACTTTGATTTAAGTGATTATGATGAGGATATGAAGCAGATGAATAATTTGAGTAAGGAAGAATTTGTTCTTCTACTTCGTCGACAAATGTATGGAATTTCAAGGGCAACTTCAGCATATAGACGTTTATTGGCTCTTCACAAATTTGGTCAAGGGGATGCAAAAATGGGCACCTTTGTTGGCACAAGATTTTGTGAGAAGCAACCCATGAAGTGTGATGATAGACAAGTGTTGAAGCCTTGTATCTATAATGGAGAGATAATTGCAAATTCTAGCAAAGGAGGTACTTGTCATAATCTTGATTTGAGCCTAGGAATTTCCCCATCTTATTCTAAGCAACAGAAGGTTAATGATTCTAAGGAACACTTATCCCTTAGATATACAGCTCCTGAAATAACCCACCAAAGGGAAACAAAGGAGAAGAAGAATGGGATAGGAAATGTTTCAATGCAAAGATTCTCAAACTTGGGTACTAGGCAACTTTGCAGCAATATGAACATTGCATCAGGGAGGTTGTTATCTAGTGCTGCATCATCTTCAGGATACTTCCTTAATAATACCAATGTTTCATCAGCCATACATCCAATTACAACAAATAATAACACTTCTGCTTACAACTTTTGCATTGGCTCAACCACAACATCATCATTTAACTCCCCAAGTTGCTAG 1275 0.3929 MAMFDLNYDIIHIDSSSTCAKELVQLQSFPSKISHSGASKSSVVINPVEEDASNNSSPFIFDVMKKGRDGNERNKGVENIAQEQERVTMTLFPMSADRGGRVSDMNKRKTEWLNLSFAEHNGQNELKTLHQKQPQIKKGRRGPRSRSSQFRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDKAAIKFRGVDADINFDLSDYDEDMKQMNNLSKEEFVLLLRRQMYGISRATSAYRRLLALHKFGQGDAKMGTFVGTRFCEKQPMKCDDRQVLKPCIYNGEIIANSSKGGTCHNLDLSLGISPSYSKQQKVNDSKEHLSLRYTAPEITHQRETKEKKNGIGNVSMQRFSNLGTRQLCSNMNIASGRLLSSAASSSGYFLNNTNVSSAIHPITTNNNTSAYNFCIGSTTTSSFNSPSC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1083 424 Gene3D AP2/ERF domain 148 207 IPR036955 GO:0003700|GO:0006355
Lal2g1083 424 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Lal2g1083 424 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 393 - -
Lal2g1083 424 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Lal2g1083 424 Pfam AP2 domain 149 197 IPR001471 GO:0003700|GO:0006355
Lal2g1083 424 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 393 - -
Lal2g1083 424 SMART rav1_2 149 211 IPR001471 GO:0003700|GO:0006355
Lal2g1083 424 ProSiteProfiles AP2/ERF domain profile. 149 205 IPR001471 GO:0003700|GO:0006355
Lal2g1083 424 MobiDBLite consensus disorder prediction 130 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1083 Lal-Chr2 7605533 7609134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1083 3 265 AP2-EREBP Transcription Factor Family AT2G28550 49.818 1.38e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal2g1083 AP2 8.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1083 K09284 - gmx:100776138 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0955 1 7122066 7126508 Lal2g1083 2 7605533 7609134 ECH
Lal2g1083 2 7605533 7609134 Lal2g1083 2 7605533 7609134 ECH