Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1064 ATGGCGAGGAACGAAGAGAATCGAATATTCGTTGGAGGTTTATCTTCTGACGTTTCGGAGCGTCAGCTCCACCGTGCTTTCGATCGTTACGGCAAGATCCTTGAATGTCAGATAATGGTTGAAAGAGGTACAGGCCGTCCACGTGGATTTGGGTTTATTACCTTTGCTGACCGTCGGGGAATGGAAGATGCAATGAAGGAAATGCATGGACGGGAGCTTGGTGATCGTGCCATCTCTGTCAATAAGGCCCAGCCAAAAATGGGGTCTGATGATGCAGACCATGGTTACAGAAGTAGCTACCCATCTGGTGGTAGGGGAAACTATAGGGTGGGAGATAGTGCAGGACAGGATGACTGCTTCAAATGTGGGCGTCCTGGGCACTGGGCTCGAGATTGCCCTATAGCAGGTGGTGGCCGGGGTGGTGGTGGCTCATTTTCTTCACGTCCTAGGTTTGGAGCTGCCGGTGGCCATGGGGATCGCTTAAGTAATGAACGTGATCGCTATGCTGATGATCGTTATGATGGAAGACGTTATGGTGATGGGGACCGTTATGACGATCGTTATGGCAGCCATGATCACCATCCCAGTGACAGATATCCAACAAACGGAGATCGTTTTGGAAGTGGTAGAAATGGTGGTTCAGATCGTTTTGGAAGTGGTAGAGATGGTGGTTCAGATCGTTACCCACAAAACGGTCATGGCAAAGATAGAGGTTACGATCGGCTAGGTGGTCCACGTGGAGCTGCTGCCGACAGATATGGAGGTGGAATGCCAGGAAGAGATGAAGGAAGGAATTATAGAAGCAGCAGGCCTGGTCCATATGATCGCCCCAGTAGGGGTGCTCCTCCATCTTCATTTGATCGTTACTGA 870 0.5046 MARNEENRIFVGGLSSDVSERQLHRAFDRYGKILECQIMVERGTGRPRGFGFITFADRRGMEDAMKEMHGRELGDRAISVNKAQPKMGSDDADHGYRSSYPSGGRGNYRVGDSAGQDDCFKCGRPGHWARDCPIAGGGRGGGGSFSSRPRFGAAGGHGDRLSNERDRYADDRYDGRRYGDGDRYDDRYGSHDHHPSDRYPTNGDRFGSGRNGGSDRFGSGRDGGSDRYPQNGHGKDRGYDRLGGPRGAAADRYGGGMPGRDEGRNYRSSRPGPYDRPSRGAPPSSFDRY 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1064 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lal2g1064 289 Gene3D - 1 116 IPR012677 -
Lal2g1064 289 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Lal2g1064 289 MobiDBLite consensus disorder prediction 138 289 - -
Lal2g1064 289 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Lal2g1064 289 MobiDBLite consensus disorder prediction 159 200 - -
Lal2g1064 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lal2g1064 289 SUPERFAMILY RNA-binding domain, RBD 5 109 IPR035979 GO:0003676
Lal2g1064 289 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lal2g1064 289 Gene3D - 117 156 - -
Lal2g1064 289 PANTHER TRANSFORMER-2-RELATED 1 229 - -
Lal2g1064 289 MobiDBLite consensus disorder prediction 228 242 - -
Lal2g1064 289 SUPERFAMILY Retrovirus zinc finger-like domains 105 138 IPR036875 GO:0003676|GO:0008270
Lal2g1064 289 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Lal2g1064 289 MobiDBLite consensus disorder prediction 81 109 - -
Lal2g1064 289 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1064 Lal-Chr2 7397092 7403777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1064 9 88 C2H2 Transcription Factor Family AT2G19380 37.500 8.42e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1064 - - gmx:100809519 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1064 2 7397092 7403777 Lal2g1064 2 7397092 7403777 ECH