Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1059 ATGGTTTGTTCCACTCTCACACTCTCACCCCAAATTCCCATTCACCAGAGACCAAAACAACAACAACAACAACCAACACTAGAATACCTCATCACAAATTTCAACACCCCATTTGAGCTTAAACAAGCACACGCTCTTCTCATCAAAACCCATCACAATGCCTCTCTCCCTCTACCTCGTGTTGCTCTTATCTGTGCCCTCACTTCAAGTTTCCCTTACGCTCATCAAATCCTTCAACGCTCTCATGAACAACCACTCTTTCTATGGAATACTTGCCTCAAAACGTTTTCCAATGACTCCCCTCAACATGCCCTCTTGTTCTTTATTCGCCTTCTTCAATTGGGTATTTACCCTGACCAGTTCACTTTTTCGTTTTTCCTCAAAGCATGTACCCACTTGTTGGATGTTAAAAATGCTAGAACAATTCATGGGTATGTTGAAAAACTAGGCCTTTTGAGGAGGAATTTGGTTTTGCAAAACATGGTTGTTCATGTTTATGTGGTTTGTGGGAGAATGAGTGATGCACGGTTGGTGTTTGATAAAATGGCTCTTAGAGATGTTGTCACTTGGAACATAATGCTCACTGGGTTTATTAAAGCGGGTCATGTTGGTGATGCTTATAGGTTGTTTTCTTCCATGCCCGAAAGGAATGTGAGGTCGTGGACCACGATGATTTCTGGGTTTGTGCAACGTGGGAGACCGAGGGAAGCTGTTGATTTGTTCTTGGAAATGGAAAAGGAAGGGTTGAGGCCTAATGAGGTGACTGTTGTGGCTGTTCTTGCTGCTTGTGCTGAATTGGGTGACTTGGAGTTTGGGAAAAGAGTTTATCATCGCTACGCAGCGGCGGAAGCAGAAGGATTTCAAGGGAATGTTCTTCTTTCCAACACTTTGATTGATATGTATGTTAAGTGTGGGTGTTTGGAGGAAGGTTATAGAGTTTTTCGTGCAATTGAAGAACGAACTGTTGTGTCCTGGTCCAGCATGATTGCAGGGTTTGCAATGCATGGGCAAGGAGAGAAGGCTTTGGAGCTGTATGATGAGATGATTAAATTTGGTGTACAACCCAATCATGTCACTTTTGTCGGGCTCCTCCATGCATGTAGCCACATGGGGTTGGTTGACAAGGGTCGCGAGTTCTTCGCTACCATGACTAGAGATTATGGAATAGTGCCTACAATTGAGCATTATGGTTGCTTGGTTGATCTGCTTAGTCGTGCAGGGTTATTGGAAGAGGCCCGTGAGGTTATAGTGAACATGCCAATGTCACCTAATGGAGTCATTTGGGGGACTCTGCTTGGTGGATGCAGACTTCACAAGAACACTGTTTTGGCTGAAGAAGCTATGAGACATATCTCTGAGTTGGATCCACTTAATGATGGATACTATGTGGTTCTATCAAATGTTTATGCAGAAGCCGGAAAATGGGAAGAAGTAGCAAGAGTTAGAAAGTTGATGAAAAGTAGAGGGGTGAAGAAAACACCTGGATGCAGTTCAATAGCAATAGATGGGGTGGTTCATGAGTTTGAAGCCGGTGATGAGACTCATCCTCAAGCAGAGAAGATATTTGAGATGTGGGAAAAACTACTTGTGAAGATGAAGGGAAAAGGGTATGTGCCGAATACTTCAGTTGTTCTTCTTGACGTGGAAGATAAAGAGAAGGAAAAGTTCCTCTTTCGCCACAGTGAGAAGCTAGCACTTGTCTTTGGGTTGATAAACACCAAACCTGGAATGACAATTAGGATAATGAAGAATCTTCGCGTATGTGAGGATTGTCATGTTGCTTTTAAACTACTATCAGCCATAGAAAATCGAGAAATTGTGGGGGTCAAAGATGAGAAAGAGGTTGAGAAGAGCGAATGTGGGATCGACGAATGTGGGATCGACGAGATTGTCGATTCAATCAATTCTATGCTTCAATGTGGTGATCCCACACCATCTCAAAGAGGCGTGCCCATAACTGAGATCAAGCACATAATGAGGGTTGAAGATAAAGTAACGGAACCTCACTCAGTGAAGCGCATGCTACTTGCCACCTCGACCCGAACCTCTTCAGCTCCAGCTTCGGTTATTCATCGAGCCTCAGTTGCAGTTAATTTTGTTTCTGACGGGAACTGTGATAATACTTATGGCGCAGAGCTTGATGTTTACATTTATGATTATTTAGTAAAGAAAAAATTACATAATACTGCCAAGGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATCGTGAGGACGAATGACAAACATTCTGAGACTGCTGCAGCATATTTAGAGGCTCAACATATTAAAGCGAAAGAACAGCAGCTGCAAATGCAGCAGTTGCAATTCATGCGACAAGCTCAGATGCAAAGAAGGGATTCCAATCACCCTCCCCTTGGTGGTCCTGTAAACGCTATCACTGCAGAAGGAATGCTTGGGCAATCTACTGCCAGTGCTTTAGCTACAAAAATGTATGAGGATCAGATGAAGCACTCTAACCGCATGGAGACAGACACATCCCAACCTCTTGTAGATGCTAGAATGGCTCTTTTGAAATCAGCAAATCATCCTGGGCAGATGGTTCAAGGAAATTCAGGGAGTGTAGTAGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAACAAACCCCCGAGATCAAAAGTGAAGTCAACATGGGCACCATGCAGAGATCCTTGCCTATGGACCCTTCTTCATTTTATGGGCATGGGGCAATGCAGTCAAAGTCTGGAATCTCAAATGCAGGATTAAACCCTGGAGTTGGTGGTCTCACACTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCATCCTGGTTTTGGAGCACAAGTTCAAAAGCCTCTCCTTCAGAGTCCTAACCAATTTCAGGTTTTGCCGCAACAACAACAGCAGCAGCAGCTCCTTGCACAGGTTCAGGCGCAAGGCAATATTGGAAGTTCACCTAGGTATGGAGATATGGATCCACAACGACTAAGGGGACTAGCGAGGGGAAGTTTGAATGTGAAAGATGGTCAACCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACCTCATCTAAGATCAAAATACCACAGATGCAACAATCCACCTCCCAGCAACAAGATCCTCTGCATCCACAGCAACGTGTACAGAATAACCGAAAAAGGAGAGGGCCTACATCTTCGGGAGCTGCCAACAGTACTGGTACAGGAAATACACGTGGACCTTGTAATTCTCAACCATCAACTCCATCTACTCACACTCCCGGTGACAGAGTTTCTATGGCGGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATAATGTATGGTACTGATGGGGCAAGTGGTCTTGCATCCTCCACAAACCAGCTGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTTGAATCATTTCTCTCACAGGACGATGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGAAACCCGTCTGAGCATGCTACAGATGCTTCAAAAGCCTTTTCGTTCAGTGAAGTTGGTTCTATACGCAAGAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGTAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAGACAGAGATCACTCCGGTGGAGCACAATCTTATTATCACTGATGTTCGTTTTAGGCCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACCGTGCGGCTTTGGGATGCTGCAGCTCCAAGCTTTTCTTTGCAGGCATACACTGGTCATACTGCACATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACGTTTTCTGTTCCAGCGATGCTAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGCACTCGTGTTTCTAAGGGAGGATCTGCACAGGTGAGATTTCAGCCAAGGATCGGACACCTTTTGGCTTCTGCAGCTAGCAATGTTGTGTCTCTCTTTGATGTTGAGAGTGACAAGCATATGCAATCATTACAGGGACACTCAACAGATGTACACTCTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTATGAGTCAAAACTCTGTCAAAGTGTGGTCAGTTGCCTCTGGGGAATGCATTCATGAGCTTAGTTCCAGTGGCAACATGTTTCATTCTTGCGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCTGAGAATAAATGCATGACAATACCAGCTCATGAGTGTGTGATATCAGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAATCTGTCAAGATTTGGAAATAA 4452 0.44 MVCSTLTLSPQIPIHQRPKQQQQQPTLEYLITNFNTPFELKQAHALLIKTHHNASLPLPRVALICALTSSFPYAHQILQRSHEQPLFLWNTCLKTFSNDSPQHALLFFIRLLQLGIYPDQFTFSFFLKACTHLLDVKNARTIHGYVEKLGLLRRNLVLQNMVVHVYVVCGRMSDARLVFDKMALRDVVTWNIMLTGFIKAGHVGDAYRLFSSMPERNVRSWTTMISGFVQRGRPREAVDLFLEMEKEGLRPNEVTVVAVLAACAELGDLEFGKRVYHRYAAAEAEGFQGNVLLSNTLIDMYVKCGCLEEGYRVFRAIEERTVVSWSSMIAGFAMHGQGEKALELYDEMIKFGVQPNHVTFVGLLHACSHMGLVDKGREFFATMTRDYGIVPTIEHYGCLVDLLSRAGLLEEAREVIVNMPMSPNGVIWGTLLGGCRLHKNTVLAEEAMRHISELDPLNDGYYVVLSNVYAEAGKWEEVARVRKLMKSRGVKKTPGCSSIAIDGVVHEFEAGDETHPQAEKIFEMWEKLLVKMKGKGYVPNTSVVLLDVEDKEKEKFLFRHSEKLALVFGLINTKPGMTIRIMKNLRVCEDCHVAFKLLSAIENREIVGVKDEKEVEKSECGIDECGIDEIVDSINSMLQCGDPTPSQRGVPITEIKHIMRVEDKVTEPHSVKRMLLATSTRTSSAPASVIHRASVAVNFVSDGNCDNTYGAELDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIVRTNDKHSETAAAYLEAQHIKAKEQQLQMQQLQFMRQAQMQRRDSNHPPLGGPVNAITAEGMLGQSTASALATKMYEDQMKHSNRMETDTSQPLVDARMALLKSANHPGQMVQGNSGSVVAALQQIQARTQQTPEIKSEVNMGTMQRSLPMDPSSFYGHGAMQSKSGISNAGLNPGVGGLTLKGWPLTGIDQIHPGFGAQVQKPLLQSPNQFQVLPQQQQQQQLLAQVQAQGNIGSSPRYGDMDPQRLRGLARGSLNVKDGQPIANDGSIGSPMQSTSSKIKIPQMQQSTSQQQDPLHPQQRVQNNRKRRGPTSSGAANSTGTGNTRGPCNSQPSTPSTHTPGDRVSMAGNLQNVAGVSKGLIMYGTDGASGLASSTNQLDDMEHFGDVGSLDDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKAFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTEITPVEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAAAPSFSLQAYTGHTAHVMSLDFHPKKNDVFCSSDANNEIRFWNISQYSCTRVSKGGSAQVRFQPRIGHLLASAASNVVSLFDVESDKHMQSLQGHSTDVHSVCWDTNGDYLASMSQNSVKVWSVASGECIHELSSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1059 1483 Pfam WD domain, G-beta repeat 1246 1276 IPR001680 GO:0005515
Lal2g1059 1483 Pfam WD domain, G-beta repeat 1207 1234 IPR001680 GO:0005515
Lal2g1059 1483 Pfam WD domain, G-beta repeat 1284 1320 IPR001680 GO:0005515
Lal2g1059 1483 Pfam WD domain, G-beta repeat 1450 1483 IPR001680 GO:0005515
Lal2g1059 1483 Pfam WD domain, G-beta repeat 1365 1400 IPR001680 GO:0005515
Lal2g1059 1483 PRINTS G protein beta WD-40 repeat signature 1221 1235 IPR020472 -
Lal2g1059 1483 PRINTS G protein beta WD-40 repeat signature 1263 1277 IPR020472 -
Lal2g1059 1483 PRINTS G protein beta WD-40 repeat signature 1470 1483 IPR020472 -
Lal2g1059 1483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Lal2g1059 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1287 1322 - -
Lal2g1059 1483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Lal2g1059 1483 Gene3D Tetratricopeptide repeat domain 386 555 IPR011990 GO:0005515
Lal2g1059 1483 Gene3D Tetratricopeptide repeat domain 280 385 IPR011990 GO:0005515
Lal2g1059 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1451 1483 - -
Lal2g1059 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1202 1243 IPR001680 GO:0005515
Lal2g1059 1483 Pfam PPR repeat family 321 368 IPR002885 -
Lal2g1059 1483 Pfam PPR repeat family 217 264 IPR002885 -
Lal2g1059 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1369 1409 IPR001680 GO:0005515
Lal2g1059 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1244 1276 - -
Lal2g1059 1483 Gene3D Tetratricopeptide repeat domain 216 279 IPR011990 GO:0005515
Lal2g1059 1483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 391 IPR002885 -
Lal2g1059 1483 Gene3D - 1338 1483 IPR015943 GO:0005515
Lal2g1059 1483 MobiDBLite consensus disorder prediction 1020 1113 - -
Lal2g1059 1483 SMART WD40_4 1195 1234 IPR001680 GO:0005515
Lal2g1059 1483 SMART WD40_4 1323 1359 IPR001680 GO:0005515
Lal2g1059 1483 SMART WD40_4 1403 1442 IPR001680 GO:0005515
Lal2g1059 1483 SMART WD40_4 1362 1400 IPR001680 GO:0005515
Lal2g1059 1483 SMART WD40_4 1237 1276 IPR001680 GO:0005515
Lal2g1059 1483 SMART WD40_4 1444 1483 IPR001680 GO:0005515
Lal2g1059 1483 SMART WD40_4 1280 1320 IPR001680 GO:0005515
Lal2g1059 1483 Pfam PPR repeat 160 183 IPR002885 -
Lal2g1059 1483 Pfam PPR repeat 395 419 IPR002885 -
Lal2g1059 1483 Pfam PPR repeat 295 320 IPR002885 -
Lal2g1059 1483 Pfam E motif 438 499 IPR046848 -
Lal2g1059 1483 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 693 1483 - -
Lal2g1059 1483 Gene3D Tetratricopeptide repeat domain 94 215 IPR011990 GO:0005515
Lal2g1059 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1202 1237 - -
Lal2g1059 1483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 216 IPR002885 -
Lal2g1059 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1287 1329 IPR001680 GO:0005515
Lal2g1059 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1451 1483 IPR001680 GO:0005515
Lal2g1059 1483 Pfam DYW family of nucleic acid deaminases 536 626 IPR032867 GO:0008270
Lal2g1059 1483 SUPERFAMILY WD40 repeat-like 1195 1483 IPR036322 GO:0005515
Lal2g1059 1483 MobiDBLite consensus disorder prediction 1033 1113 - -
Lal2g1059 1483 Pfam PPR repeat 186 213 IPR002885 -
Lal2g1059 1483 CDD WD40 1198 1483 - -
Lal2g1059 1483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Lal2g1059 1483 TIGRFAM PPR: pentatricopeptide repeat domain 358 392 IPR002885 -
Lal2g1059 1483 TIGRFAM PPR: pentatricopeptide repeat domain 188 218 IPR002885 -
Lal2g1059 1483 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Lal2g1059 1483 TIGRFAM PPR: pentatricopeptide repeat domain 220 253 IPR002885 -
Lal2g1059 1483 SMART Lish 709 741 IPR006594 GO:0005515
Lal2g1059 1483 Pfam LisH 712 737 IPR006594 GO:0005515
Lal2g1059 1483 Gene3D - 1179 1337 IPR015943 GO:0005515
Lal2g1059 1483 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 693 1483 IPR044716 GO:0003714
Lal2g1059 1483 ProSitePatterns Trp-Asp (WD) repeats signature. 1221 1235 IPR019775 -
Lal2g1059 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1244 1276 IPR001680 GO:0005515
Lal2g1059 1483 ProSiteProfiles LIS1 homology (LisH) motif profile. 709 741 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1059 Lal-Chr2 7344555 7360375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1059 41 607 Glycoside Hydrolase AT3G49170 35.590 8.70e-107 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal2g1059 DYW_deaminase 1.9e-33 CL0109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1059 - - gmx:100797756 1318.52