Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1047 ATGTCTAACCCAAAGAGGAGCCAAGGTCGCCGAAAGATTGAGATGAAAAAGATAGCCAAAAAAAGCAGTTTGCAAGTGACTTTTACAAAACGTCGAAAAGGGCTTTTTCAAAAAGCTAGTGAGCTTTCTACCCTTTGTGGTGCAGAAATAACTCTCATAGTTTTCTCCCCAGGAGAAAAAGTTTTCTCTTTTGGTCACCCTAGTGTCAATGCTGTCATAGACCGTTATCAAATGAGAGTCCCAACACAAAACTCAGAAATTATGAATTTGATAGAAGCTCAACGAAGTGTCAATGTTCGTGAGCTTAATGAACACCTAACTGGAACCAATGCTGAGTTAGAAATGGAAAAGAAGCGTAGTGATGATCTAAACCAGATGAGAAAAGAGGCACAAGAACAATTTTGGTGGGCTTCTCCTATTGATGACATGAATATAGCACAACTTGATCAGTTTAAGTTGTGTTTGGAGGTTCTTAAGAAGAGTGTTACTCCACTTGTGGAAAAACAACTTGCTTCTTTAAACCCACCTTCTCAGGTTTATTCAGGTAGCTCCTCCTCAAACAACTGTATGTTGCTTCATCAACCACCGTGTCATCCACCATCACAAGTGTTTCATGTTCCACAGCAACAAGTGTTTCAGAACCAACCTTCAATGCTGTCTATGATGATGCATCACCCTAACTTTGACAATGATGTTGGAGGGTTTGGACCTGGAGGTGGATTTTTCTGA 729 0.4033 MSNPKRSQGRRKIEMKKIAKKSSLQVTFTKRRKGLFQKASELSTLCGAEITLIVFSPGEKVFSFGHPSVNAVIDRYQMRVPTQNSEIMNLIEAQRSVNVRELNEHLTGTNAELEMEKKRSDDLNQMRKEAQEQFWWASPIDDMNIAQLDQFKLCLEVLKKSVTPLVEKQLASLNPPSQVYSGSSSSNNCMLLHQPPCHPPSQVFHVPQQQVFQNQPSMLSMMMHHPNFDNDVGGFGPGGGFF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1047 242 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Lal2g1047 242 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Lal2g1047 242 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Lal2g1047 242 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Lal2g1047 242 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Lal2g1047 242 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Lal2g1047 242 Coils Coil 99 133 - -
Lal2g1047 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Lal2g1047 242 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Lal2g1047 242 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Lal2g1047 242 Gene3D - 89 178 - -
Lal2g1047 242 PANTHER MADS BOX PROTEIN 7 195 - -
Lal2g1047 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1047 Lal-Chr2 7220064 7220792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1047 5 187 Type I MADS-box Gene Family AT5G60440 48.925 4.85e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal2g1047 SRF-TF 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1047 - - gmx:100794751 220.705