Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1040 ATGGCTAAAGATGTTGAGGTAGCTAAGCATGGATCTTTCTCTTCAAAGGACTATCATGACCCTCCTCCAGCACCTTTTTTTGATGCTAAGGAACTCACCCAATGGTCCTTCTATAGGGCTCTAATAGCTGAGTTCATAGCCACCTTGCTCTTCCTTTACATCACTGTCTTAACTGTTATTGGGTATAAAAGCCAGAGTGATGTCAAAGCTGGAGGTGATGCTTGTGGTGGTGTTGGTATTCTTGGTATTGCTTGGTCCTTTGGTGGCATGATCTTTATCCTTGTTTATTGCACTGCTGGAATCTCAGGTGGTCACATTAACCCAGCAGTGACATTTGGTCTGTTATTGGGTCGCAAGGTTTCTCTGATCCGAGCCATTTTGTACATTGTGGCTCAGTGCTTAGGAGCTATAAGTGGAGTTGGGTTAGTGAAGGCTTTTCAAAAGGGTCATTTCAACAGGTATGGTGGTGGAGCCAATGGTCTTAATGATGGTTACAGCATAGGTGTTGGTTTAGGTGCTGAGATCGTTGGAACCTTTGTTTTGGTCTACACTGTCTTCTCTGCTACTGATCCCAAGAGAAATGCTAGAGATTCTCATATCCCTGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTTCATTTGGCAACCATCCCGGTCACTGGCACTGGCATCAATCCTGCAAGAAGTTTTGGATCTGCTGTTATCTATAATAATCATAAAGCCTGGGATCACCATTGGATATTTTGGGTAGGACCATTTATTGGGGCAGCAATTGCAGCTTTCTATCATCAATTCATTTTGAGAGCTGGTGCAGCTAAAGCTTTTGGATCATTCAGGAGTAACCCTACTGTTTGA 864 0.4352 MAKDVEVAKHGSFSSKDYHDPPPAPFFDAKELTQWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDVKAGGDACGGVGILGIAWSFGGMIFILVYCTAGISGGHINPAVTFGLLLGRKVSLIRAILYIVAQCLGAISGVGLVKAFQKGHFNRYGGGANGLNDGYSIGVGLGAEIVGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGSAVIYNNHKAWDHHWIFWVGPFIGAAIAAFYHQFILRAGAAKAFGSFRSNPTV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1040 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal2g1040 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal2g1040 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal2g1040 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal2g1040 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal2g1040 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal2g1040 287 TIGRFAM MIP: MIP family channel proteins 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal2g1040 287 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Lal2g1040 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal2g1040 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Lal2g1040 287 PANTHER AQUAPORIN PIP2-4-RELATED 1 284 - -
Lal2g1040 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 284 IPR034294 -
Lal2g1040 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lal2g1040 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1040 Lal-Chr2 7139638 7145638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1040 1 287 Major Intrinsic Protein MIP AT2G37170 80.836 2.32e-173 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1040 K09872 - gmx:547857 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0093 20 588654 591908 Lal2g1040 2 7139638 7145638 ECH
Lal1g1816 1 20519335 20521969 Lal2g1040 2 7139638 7145638 ECH
Lal2g1040 2 7139638 7145638 Lal2g1040 2 7139638 7145638 ECH