Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1019 ATGGCGGCTGTGGCAGTTGGGGGTCAAACGGCGTCGCTTTATGTGGGAGATCTAGAGAGCAATGTGAATGAAGGGCAATTATATGATCTGTTCAGCCAAGTGGCACAAGTTGTTTCAATTAGGGTTTGTAGGGATCAAACTCGCCGTTCATCTCTTGGCTATGCTTATGTCAACTTCCCTACCCCTATTGATGCGGCAAATGCCATGGAACATCTTAACTTCACTTCCCTGAATGGGAAACCCATTCGTATTATGTATTCTCATAGAGATCCTAGCATGAGGAAAAGTGGATTTGCAAATTTGTTTATTAAGAACCTGAGCACTTCAATTGATAACAAGGGGTTACATGACACATTTGCTGCCTTTGGAACTATACTTTCTTGCAAGTTAGCTGTTGATGGGAGTGGTCAGTCAAAGGGGTACGGTTTTGTACAGTTTGATAATGACGAGTCTGCACAGACTGCTATCAATAAGTTGAATGGCATGTTGTTAAATGATAAAAAAGTCTATGTTGGACTCTTTGTTCGCCGCCAGGAAAGATCCCCATCAAATGGATCACCAAAGTTCACAAATGTGTATGTGAAAAATTTGTCTGAAGCATATACTGATGAGGACCTGAAGCACCTGTTTGGTCCTTATGGTGCAATAACTAGTGCTGTGGTCATGAACGACGTGAATGGGAAATCCAGATGTTTTGGTTTTGTGAATTTCCAAACTCCAGATTCGGCAGCTGCTGCAGTTGATAAGTTAAACGGAACCACAACCAATGGTGACAAGGTTTTATTTGTCGGGAGAGCTCAGAGTAAGGCAGAAAGAGAAGCTGATTTAAAAGCCAAATTTGAGCAGGAAAGGTTAGGAAGATATGACAAATTACAAGGTGCTAATTTATACCTGAAAAATCTGGATGATAGCGTCACTGATGACAACTTGACGGAGCTATTTTCTGAGTATGGAACAATTACATCTTCCAAGGTGATGGTTGATTCGCTGGGGCAAAGCAGGGGCTCTGGTTTTGTGGCCTTTTCTACTCCTGAGGAAGCAAATAAAGCTTTGATAGAAATGAATGGAAAAATGATTGGACGGAAGCCTTTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCTCGTTTGCAGGCTCAGTTTTCGCAAGTCCAAGCGCCAGGTGCGATTGCACCTCTTCCCGCAGGAATTCCTGGATATCATCCAGGGACTCCACGATTTGCCCCTCAACAATTGTACTATGGACAAGGTACACCTGGTCTCATACCACCTCAGCCAGCAGGATATGGTTTCCAGCAGCAACTCATGCCTGGAATGCGGCCTGGTGTTCCTCCTAATTATATTATGCCATACCAACTTCAGAGACAGGCTCAGCCTGTGCAGAGGATGGGTGTTCGACGAGCTGGAAATCTCCAACAAGTGCAGCCGAACCAGATGCTAAACCAGAACTCCAACCAAGGGTTTAGGTATGGTAGGAATGGCACGGACTCAATGGTGCCATTACCCTTTGATGGCTCTGCCGTTACTGAAGCTCCTATTGATAATCAGCATCTTGGAGCATTATCTAACACACTTGCCTCGGCTTTGGCCTCTGCTACCCCAGAAAATCAGCGAATGATGCTGGGTGAACATCTATATCCGCTGGTGGGTCGTCTTACGCCGAGCAACCAGACAGCAAAGGTGACAGGAATGTTGCTGGAAATGGACAAGGCAGAGGTAATCCATCTGATTGAATCTCCTGATGAATTGAAGATAAAGGTGTCTGAGGCATTGCATGTCCTTCGTGAAGCTGGACCGGGCTCTGATGTTGGTGATCAGCTTAGCTCATTGTCATTGAATGAATGA 1851 0.4511 MAAVAVGGQTASLYVGDLESNVNEGQLYDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFPTPIDAANAMEHLNFTSLNGKPIRIMYSHRDPSMRKSGFANLFIKNLSTSIDNKGLHDTFAAFGTILSCKLAVDGSGQSKGYGFVQFDNDESAQTAINKLNGMLLNDKKVYVGLFVRRQERSPSNGSPKFTNVYVKNLSEAYTDEDLKHLFGPYGAITSAVVMNDVNGKSRCFGFVNFQTPDSAAAAVDKLNGTTTNGDKVLFVGRAQSKAEREADLKAKFEQERLGRYDKLQGANLYLKNLDDSVTDDNLTELFSEYGTITSSKVMVDSLGQSRGSGFVAFSTPEEANKALIEMNGKMIGRKPLYVAVAQRKEERKARLQAQFSQVQAPGAIAPLPAGIPGYHPGTPRFAPQQLYYGQGTPGLIPPQPAGYGFQQQLMPGMRPGVPPNYIMPYQLQRQAQPVQRMGVRRAGNLQQVQPNQMLNQNSNQGFRYGRNGTDSMVPLPFDGSAVTEAPIDNQHLGALSNTLASALASATPENQRMMLGEHLYPLVGRLTPSNQTAKVTGMLLEMDKAEVIHLIESPDELKIKVSEALHVLREAGPGSDVGDQLSSLSLNE 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1019 616 SUPERFAMILY RNA-binding domain, RBD 11 179 IPR035979 GO:0003676
Lal2g1019 616 SUPERFAMILY RNA-binding domain, RBD 189 375 IPR035979 GO:0003676
Lal2g1019 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Lal2g1019 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 176 IPR000504 GO:0003723
Lal2g1019 616 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 523 601 IPR002004 GO:0003723
Lal2g1019 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Lal2g1019 616 SMART rrm2_1 12 85 IPR003954 GO:0003676
Lal2g1019 616 SMART rrm2_1 100 172 IPR003954 GO:0003676
Lal2g1019 616 SMART rrm2_1 295 367 IPR003954 GO:0003676
Lal2g1019 616 SMART rrm2_1 191 263 IPR003954 GO:0003676
Lal2g1019 616 Gene3D - 100 173 IPR012677 -
Lal2g1019 616 Gene3D - 280 384 IPR012677 -
Lal2g1019 616 Gene3D - 174 279 IPR012677 -
Lal2g1019 616 Gene3D - 520 600 - -
Lal2g1019 616 SUPERFAMILY PABC (PABP) domain 470 600 IPR036053 GO:0003723
Lal2g1019 616 CDD RRM3_I_PABPs 189 269 - -
Lal2g1019 616 CDD RRM4_I_PABPs 293 371 - -
Lal2g1019 616 Gene3D - 5 99 IPR012677 -
Lal2g1019 616 CDD RRM1_I_PABPs 12 91 - -
Lal2g1019 616 SMART poly_2 535 599 IPR002004 GO:0003723
Lal2g1019 616 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Lal2g1019 616 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 83 IPR000504 GO:0003723
Lal2g1019 616 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 259 IPR000504 GO:0003723
Lal2g1019 616 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Lal2g1019 616 PANTHER POLYADENYLATE-BINDING PROTEIN 10 604 - -
Lal2g1019 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Lal2g1019 616 PANTHER RNA BINDING PROTEIN 10 604 - -
Lal2g1019 616 CDD RRM2_I_PABPs 97 172 IPR045305 -
Lal2g1019 616 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 11 597 IPR006515 GO:0003723
Lal2g1019 616 SMART rrm1_1 191 264 IPR000504 GO:0003723
Lal2g1019 616 SMART rrm1_1 295 367 IPR000504 GO:0003723
Lal2g1019 616 SMART rrm1_1 12 85 IPR000504 GO:0003723
Lal2g1019 616 SMART rrm1_1 100 172 IPR000504 GO:0003723
Lal2g1019 616 Pfam Poly-adenylate binding protein, unique domain 531 596 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1019 Lal-Chr2 6964230 6968857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1019 11 610 Eukaryotic Initiation Factors Gene Family AT1G71770 57.717 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1019 K13126 - gmx:100783163 938.332