Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1018 ATGAGAAGAAGGGGTAGAGAGCTTCTTAGTCTCTCTTTTTCTCTACACTCACCAATGAAGCATCATTACCCATTTCCAAAACTACCATCAACTTTTACTTTCTCAACTTCTTCTTCCTCCTCCAACCATATAACCTCTCCTCCTTCTGTTAAAGAAGAAAACACATCACCACTACCACCACCACCATCATCCAAGTCAAGGGACTCAATGCTTTTGGAAAAGTTTAAACAAAGAAAACTCAAAGGCTCTTCAAATGGCACAGCTTCACTTGCATCAAATGTGGCTGAAAAGGGTCAAAATGAACCAACTATGGTGGTTTCTGGTTTTAAGGAGTTGGGTTTGAATGATGAGCTTGTTGAGGTGTTGGAAGGGATTGGTGATTTTGTTCCTAGTGAGATACAGTGTGTGGCTATTCCAACTATTTTGGAAGGGAAATGTGTCTTATTAAGTTCACCTTCTGGACCTGAAAAGGCTTTGGCTTTCTTATTGCCCCTTATTCAGCTGCTGAGACAGGATTTGCTTGGTTCGAATTCGAATCATCCCCGAAGCGTTGTGCTTTGTGCTACAGAGGACAAAGCTGAAGAGTGCTTTAATGCTGCAAAATATATCATCCATAATTCAGAATTGAAATCTGCAAAGGGTTCTGCTCCGCGGTCAAATACTTCAATCGGTCTCATAATTGGAACGCCTTATGAGATTCTGCAATACATTGAAGAGGGTAGTGTTGTTCCTGTGGAGTTAAGATACTTGGTAGTGGATGATGTGGATTACATGCTTGGTAATGGACTTGGTCCCGAAATCCACAAAATTCTCACACCATTACTAGATCCTGAATCAAAATCTAATGTCAAAAGATTGCAGACAGTTTTGGCAACTTCCAGTATAACTGAGGTTTTGGGTGAACAATCTCCCATTGTGAAGAACCTCGAGCGTGATCATGCGGGAAATATATCTGCAATGTGTTTAGAAATGGATCAAACAGAAGTCTTTCATTTTATAGAGTCTCTGGATTCTCTTAGGGGAAAAGTAGCAGAGGCCATGGATTCCCTTTTGAAATGA 1059 0.407 MRRRGRELLSLSFSLHSPMKHHYPFPKLPSTFTFSTSSSSSNHITSPPSVKEENTSPLPPPPSSKSRDSMLLEKFKQRKLKGSSNGTASLASNVAEKGQNEPTMVVSGFKELGLNDELVEVLEGIGDFVPSEIQCVAIPTILEGKCVLLSSPSGPEKALAFLLPLIQLLRQDLLGSNSNHPRSVVLCATEDKAEECFNAAKYIIHNSELKSAKGSAPRSNTSIGLIIGTPYEILQYIEEGSVVPVELRYLVVDDVDYMLGNGLGPEIHKILTPLLDPESKSNVKRLQTVLATSSITEVLGEQSPIVKNLERDHAGNISAMCLEMDQTEVFHFIESLDSLRGKVAEAMDSLLK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1018 352 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 313 IPR014001 -
Lal2g1018 352 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 352 - -
Lal2g1018 352 MobiDBLite consensus disorder prediction 33 52 - -
Lal2g1018 352 Pfam DEAD/DEAH box helicase 132 293 IPR011545 GO:0003676|GO:0005524
Lal2g1018 352 Pfam Poly-adenylate binding protein, unique domain 299 348 IPR002004 GO:0003723
Lal2g1018 352 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
Lal2g1018 352 SMART ultradead3 126 318 IPR014001 -
Lal2g1018 352 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 1 352 - -
Lal2g1018 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 298 IPR027417 -
Lal2g1018 352 MobiDBLite consensus disorder prediction 33 68 - -
Lal2g1018 352 Gene3D - 71 306 IPR027417 -
Lal2g1018 352 SUPERFAMILY PABC (PABP) domain 296 348 IPR036053 GO:0003723
Lal2g1018 352 SMART poly_2 291 352 IPR002004 GO:0003723
Lal2g1018 352 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 267 352 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1018 Lal-Chr2 6959754 6962748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1018 285 350 Eukaryotic Initiation Factors Gene Family AT2G23350 44.286 1.71e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1018 - - gmx:100800575 407.142