LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal2g1017	ATGGCAGGAAGAACCATTTTCACTCTCTCATTCTCTTCTTCCAACTTCTCTTCCTTCACGCGCCTCTCTCACCATGTCAACCTCACACTCTCCAAACCCTTCATCAGATTCTTCCCACGCTTCAGGCCACTCTGTTCCATCGCCACCGCCGCACCGGAAACCGCAGACCTTATGAAGCACTCCACGCTCCTCGAGAAGCTTAGAATCAGGCACCACAAGGACAAGCTCAAACACCCAGAATCAAAAAAGAAGAGTCTTTCTTCAAATAATGATTCTTCTGTTGAGATAAAGAAGAAATCTTTTGAGGAGAAAGAGAAGTTGATTGGGAGTTTTGAGGAGTTGGGATTGAATGATGAGGTTATGGGATCTGTTAGAGAAATGGGTATTGAAGTTCCCACTGAGATACAGTGTATTGGTGTACCTGCTGTGTTACAAGAGATGAGTGTTGTGTTAGGCTCTCATACTGGTTCTGGAAAAACTCTTGCTTACTTGCTTCCCATTGTTCAGCTTCTAAGACGGGATGAACAATTGAATGGAATGGTTTTGAAGCCCAGGCGTCCCCGAGCTGTTGTTTTATGCCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCAATAAGCCATCATGCACGATTCAGGTGTACCATGGTTAGTGGTGGTGGCCGTCTTAGGCCCCAAGAGGATTCACTTAATAATCCCATAGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACACATCGAGGAGGGAAATATGGTATATGGTGACCTCAAATACTTAGTGTTGGATGAGGCAGACACAATGTTTGATCGGGGCTTTGGTCCTGATATACGCAAATTTCTGGGCCCATTAAAGCGTCGTGAATCAAAATCTGATGGTCCAGGTTTTCAGACTGTCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAACACTTGTTGATGAGGAGTTTCAAGGCATTGTACATCTGCGCACATCGACATTGCATAAAAAGATTTCTTCGGCTCGTCATGACTTTATTAAACTTTCAGGTTCAGAGAACAAGCTGGAAGCATTGCTTCAGGTACTTGAGCCAAGCCTGGCAAAGGGGCACAGGGTTATGGTTTTCTGCAATACATTGGATTCAAGCCGTGCTGTGGATCACTTTCTTGGTGAAAATCAGATTTCTACTGTCAACTACCATGGGGAGGTACCGGCAGAGCAAAGGGTTGAAAACCTGAAAAAGTTTAAGAGTAATGATGGAGATTGCCCGACATTGGTTTGCACAGATTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCGAAGAATTCTATCGACTACCTTCATCGCACGGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACAAGTTTGGTTGCTAGAAGGGACACTGTCTTGGCCACCAGAATAGATGAGGCACTGAGGAAGAATGAGAGTTTGGAAGCTATCACTTCAGAAAGTGTCCGAAACGACATTACCAGGACCCAAATCACTGAGAAGAGAGGAAGGAACAAAAATTTTGTTAATGCTTCAAAGGCTAAGACGAATTCTGGTGGCCGCCCCAGTTCAGCCGACGAGTCAGATTCGAAATCCAGAAAAGGATCACCATCAACAGCAAAACCTATGAAGAAAGGAATTAATGTTTCAAAGCCTGTAAAATCTCACAGTGCAAGTAGCTCTAGAAAAGCTTATTCAGGGAATAAGCAAACAAGTAAAAGGGCCAATGCCACCAATAACCAACAACAACAGTCAAGGCCTTTTGCTGTTAGAACTTCTAAACCAAGTGCCTCAAAATCTTCAGATTCTAAACTCATTGTTGTGGGGTTTAGGGGAAGGAATTCATCATCAAATAATACATAA	1899	0.4402	MAGRTIFTLSFSSSNFSSFTRLSHHVNLTLSKPFIRFFPRFRPLCSIATAAPETADLMKHSTLLEKLRIRHHKDKLKHPESKKKSLSSNNDSSVEIKKKSFEEKEKLIGSFEELGLNDEVMGSVREMGIEVPTEIQCIGVPAVLQEMSVVLGSHTGSGKTLAYLLPIVQLLRRDEQLNGMVLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDLKYLVLDEADTMFDRGFGPDIRKFLGPLKRRESKSDGPGFQTVLVTATMTKAVQTLVDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGHRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLKKFKSNDGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVARRDTVLATRIDEALRKNESLEAITSESVRNDITRTQITEKRGRNKNFVNASKAKTNSGGRPSSADESDSKSRKGSPSTAKPMKKGINVSKPVKSHSASSSRKAYSGNKQTSKRANATNNQQQQSRPFAVRTSKPSASKSSDSKLIVVGFRGRNSSSNNT	632

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal2g1017	632	SMART	helicmild6	381	463	IPR001650	-
	Lal2g1017	632	Gene3D	-	338	506	IPR027417	-
	Lal2g1017	632	MobiDBLite	consensus disorder prediction	507	632	-	-
	Lal2g1017	632	MobiDBLite	consensus disorder prediction	564	615	-	-
	Lal2g1017	632	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	35	539	-	-
	Lal2g1017	632	SMART	ultradead3	128	347	IPR014001	-
	Lal2g1017	632	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	109	137	IPR014014	GO:0003724
	Lal2g1017	632	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	140	327	IPR014001	-
	Lal2g1017	632	MobiDBLite	consensus disorder prediction	515	537	-	-
	Lal2g1017	632	Pfam	DEAD/DEAH box helicase	133	315	IPR011545	GO:0003676\|GO:0005524
	Lal2g1017	632	MobiDBLite	consensus disorder prediction	73	95	-	-
	Lal2g1017	632	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	35	539	-	-
	Lal2g1017	632	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	352	505	IPR001650	-
	Lal2g1017	632	Pfam	Helicase conserved C-terminal domain	352	463	IPR001650	-
	Lal2g1017	632	CDD	SF2_C_DEAD	340	472	-	-
	Lal2g1017	632	CDD	DEADc	120	319	-	-
	Lal2g1017	632	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	141	474	IPR027417	-
	Lal2g1017	632	Gene3D	-	69	328	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal2g1017	Lal-Chr2	6953422	6960364	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal2g1017	108	485	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.949	2.98e-40	150

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal2g1017	-		-	vun:114182370	841.262