Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0987 ATGTGCTTACAAACTGTGGCGTACCATGGTGATGATGAACACAATGGTGTAAGTTCTAGGACATCTGGGTCACAAGGAATGAACCAAGTGATGGAGCAAGAAGAAGGTACAATGCAAGATTCTTCTGTGGTTTCAACTCTGACTAATAATGTTGTGTCAGGGTCAAGACAGGGAAGCAGTGAGTGGGTTCAGGTCCAAGGAAGTGGTGGTTTTCCTATGATGTCTGTTTTTGGACATGTATCTCCTTCTTCTCCTTCTACTTTCTCTTCTTTCCCTTCTCGTTCTGCTTTGGCTTATGGGTCATGGGTTGGGAACAAAAGAAGGCGTGAAGAAGAGAGTGGTGCTCTTCATCAGTTTATGCAACAAGATGATCCTATACACTTCAGAAACATTGGTGACTTCAGGGTACTAACACAAGGAGTGTCATCATCAGAAGCTTCTACCACCACCACCACCACCACTGCAATCACGGTGGCTGTCACTACGCCGGCGACACCATCTAGTGAAACAGCTTCAAATGATGAAACCATAGAGAGAATAAGGTACAGGGGAGTGAGGCAAAGGCCATGGGGAAAATGGGCAGCAGAAATTCGTGATCCACACAAAGCAACAAGAGTTTGGCTTGGCACATTTAACACAGCAGAAGCTGCAGCAAGAGCTTATGATGAAGCTGCATTAAGATTCAGAGGCAACAAAGCAAAGCTAAATTTCCCTGAAAATGTTAGAGCATTGCCACCACCACCACCACCAATTCACACTTTTCCACCCACCACAATACTGGCGCCTGCCACCTCTGACTCCTCCGCCATTCATTTCCGGCAGCCCCAAGCCGCAATCGTGACACCGCCGCAATTTCAGCAGCAGCCATTACTCCAGGTCCAGGGTTCCTCTGATTTGATCAGAGACTATTGGGAATATTCGCAGATTCTTCAAAGTTCTGGTGATTTTCAACAACAATTACAATTACAACAACAATTGTACTATAATTCACAATTGGGTGCACTTCAATCATCTTCATTGTTATCATCATCACCTTCTTTATCGTCTTCTATGTCAGCAACTGCATCATTTTCACCACCTACTCAATTTTCTTCTCCTTCATGCCCCATGTTTTCTAGTCAACAAATGGGCTATTTCCGGCCACCGGGAAACCAAACTCAAGGTGGCGGCGTCACCGGATCGAAGTTTCCGCCACCTCCTAATTGA 1206 0.4552 MCLQTVAYHGDDEHNGVSSRTSGSQGMNQVMEQEEGTMQDSSVVSTLTNNVVSGSRQGSSEWVQVQGSGGFPMMSVFGHVSPSSPSTFSSFPSRSALAYGSWVGNKRRREEESGALHQFMQQDDPIHFRNIGDFRVLTQGVSSSEASTTTTTTTAITVAVTTPATPSSETASNDETIERIRYRGVRQRPWGKWAAEIRDPHKATRVWLGTFNTAEAAARAYDEAALRFRGNKAKLNFPENVRALPPPPPPIHTFPPTTILAPATSDSSAIHFRQPQAAIVTPPQFQQQPLLQVQGSSDLIRDYWEYSQILQSSGDFQQQLQLQQQLYYNSQLGALQSSSLLSSSPSLSSSMSATASFSPPTQFSSPSCPMFSSQQMGYFRPPGNQTQGGGVTGSKFPPPPN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0987 401 MobiDBLite consensus disorder prediction 350 401 - -
Lal2g0987 401 Pfam AP2 domain 181 230 IPR001471 GO:0003700|GO:0006355
Lal2g0987 401 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 38 379 - -
Lal2g0987 401 Gene3D AP2/ERF domain 180 240 IPR036955 GO:0003700|GO:0006355
Lal2g0987 401 CDD AP2 181 240 IPR001471 GO:0003700|GO:0006355
Lal2g0987 401 MobiDBLite consensus disorder prediction 17 43 - -
Lal2g0987 401 PRINTS Ethylene responsive element binding protein signature 182 193 IPR001471 GO:0003700|GO:0006355
Lal2g0987 401 PRINTS Ethylene responsive element binding protein signature 204 220 IPR001471 GO:0003700|GO:0006355
Lal2g0987 401 SMART rav1_2 181 244 IPR001471 GO:0003700|GO:0006355
Lal2g0987 401 MobiDBLite consensus disorder prediction 8 43 - -
Lal2g0987 401 PANTHER DNA-BINDING DOMAIN 38 379 IPR044808 GO:0003700|GO:0009873
Lal2g0987 401 ProSiteProfiles AP2/ERF domain profile. 181 238 IPR001471 GO:0003700|GO:0006355
Lal2g0987 401 MobiDBLite consensus disorder prediction 350 392 - -
Lal2g0987 401 SUPERFAMILY DNA-binding domain 181 239 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0987 Lal-Chr2 6750842 6753276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0987 129 242 AP2-EREBP Transcription Factor Family AT5G61890 52.846 1.18e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal2g0987 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0987 - - gmx:100804843 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0987 2 6750842 6753276 Lal2g0987 2 6750842 6753276 ECH
Lal2g0987 2 6750842 6753276 Lal9g0875 9 6563347 6566327 LSH
Lal2g0987 2 6750842 6753276 Lal24g0080 24 518402 519358 PCT
Lal24g0080 24 518402 519358 Lal2g0987 2 6750842 6753276 PCT